Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e17
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.95 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   2.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   2.9  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.8  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   5.0  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    26   6.7  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   8.8  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   8.8  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 183 LLIHRLCV*RLAQNKDKLGSRANFCT 106
           +L+H+ C+ RL  +++ L  R N+CT
Sbjct: 37  ILVHQKCIERLGTSENALSVRKNWCT 62


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 134 LSLFCANLQTQSRCMSNCFCPEIYSRLVSD 223
           L+L C NL+T          PE++SRL SD
Sbjct: 658 LALECGNLETALELARTIDRPEVWSRLASD 687


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 VQKLALDPSLSLFCANLQTQSRCMSNCFCPEIYS 208
           V +L   P L++    L T S   SNC CP + S
Sbjct: 291 VSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKS 324


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 658 MIAIEAVINCLTFCTPLPFGNKVLPIE 738
           ++ I  VI C TF  P+ +G+K L ++
Sbjct: 733 LLLIFVVIYCFTFFAPMTYGDKSLSVD 759


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 78  RFFRCDLDGTCKNW-LWIRVCLYSAPTFRHKVGV 176
           R F C LDGT K W +  + C+++   F H  GV
Sbjct: 446 RLFSCSLDGTIKQWDIEKKKCVHT--LFGHIEGV 477


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 271 KHSSFDVRHSGFRIFVWSSCPAASVDETKN 360
           KHS    R +G R F +  C A S  E+KN
Sbjct: 47  KHSRHKNRVNGPRTFAFDECFAPSAPESKN 76


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -1

Query: 215 PALSIFLGRNSYSYTDFVSEGWRRIKTNSDPEPIFARTIEITPKETDRDTVIEIDK-EDF 39
           P L+ FLG    S    V + W  IK +   +P   RTI    K     +V E+D    F
Sbjct: 125 PKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDK---LKSVFEVDTLHMF 181

Query: 38  DMKPIKITLMPK 3
            M      LM K
Sbjct: 182 TMNKYLTNLMTK 193


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 158 EGWRRIKTNSDPEPIFARTIEITPKETDRDTVIEIDKEDFDMKPIK 21
           +G +  K   D EP   + IE      +   V E+D ++FD KP K
Sbjct: 109 KGKKSKKVEEDDEP---QEIESPQGPKELTAVTELDDDEFDYKPKK 151


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 295 HSGFRIFVWSSCPAASVDETKNHFR 369
           H G  +++W SC       TK+ FR
Sbjct: 33  HKGNELYIWVSCSEMCQKRTKHLFR 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,095
Number of Sequences: 5004
Number of extensions: 69930
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)