Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e17
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598...    31   1.3  
01_07_0361 - 43058132-43058164,43058309-43058374,43058712-430587...    30   2.3  
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           29   5.3  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    28   7.0  
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     28   7.0  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   9.2  

>11_01_0724 +
           5981680-5981748,5982301-5982397,5982496-5982593,
           5983535-5983690,5983986-5984063,5984135-5984266,
           5984856-5984936,5985442-5985510,5985597-5985686,
           5986001-5986145,5986218-5986276,5986384-5986479,
           5986561-5986628,5986704-5986803,5986910-5986966,
           5987179-5987337
          Length = 517

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 734 IGNTLFPNGKGVQKVKQLITASMAIIKGNTVWKDA 630
           I  TL PN   V+ +++ +TA MA+ + +  W DA
Sbjct: 32  IVGTLGPNSHSVEVIQECLTAGMAVARFDFSWMDA 66


>01_07_0361 -
           43058132-43058164,43058309-43058374,43058712-43058794,
           43058902-43059014,43059311-43059428,43059935-43060040,
           43060128-43060205,43060322-43060372,43060461-43060521,
           43060991-43061115,43061671-43061760,43061886-43061965,
           43062060-43062489
          Length = 477

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
 Frame = -1

Query: 413 CVGCTNCT-AKRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQN 237
           C   T+C   K+  +    +  +  E  G L   K  NP+     ++  R CD    + N
Sbjct: 105 CRNRTSCDHRKKTSLGSSAYMETRVEFVGILSDDKAQNPDFYNWNKVKIRYCDGASLSGN 164

Query: 236 VAMNHQIPALSIFLGRNSYS--YTDFVSEGWRRIK 138
           V   HQ  A   F G+  +     + + +G  R K
Sbjct: 165 VQDEHQYGATFFFRGQRIWEAVMAELLPKGLARAK 199


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 110 QKLALDPSLSLFCANLQTQSRCMSNCFCPEIYSRLVSDGSLQHSA 244
           QKLA     S FC N +    C S+C  P     +  D  +  +A
Sbjct: 362 QKLAPQDQASRFCLNCRKPGHCFSDCPLPRAAKAVHRDSQVTSTA 406


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 325 SCPAASVDETKNHFRFTSGLLAVQLVHPTH 414
           SC + +++E + HFRF    L + + HP+H
Sbjct: 71  SCGSNAIEECEGHFRFIE--LPMPIFHPSH 98


>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +1

Query: 301 GFRIFVW--SSCPAASVDETKNHFRFTSG--LLAVQLVHPTHGGVYLMVP 438
           G   FVW  SSC A       N      G  LL VQ VHP +G    M P
Sbjct: 97  GVEAFVWFRSSCDAERARSVTNGRNIYDGCCLLDVQHVHPFNGNGVNMTP 146


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 580 IGRLGVSDSSVTCSIFMASFHTVFPLMIAIEAVINCLTF--CTPLPF 714
           I  LG+ D SV C   ++  H  FP+ + +  ++  L +    PLPF
Sbjct: 762 ISILGLGDKSVDCIRLLSLKHKGFPVDVNVARIVTRLGWVKLQPLPF 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,615,592
Number of Sequences: 37544
Number of extensions: 445801
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)