Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e17
         (755 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118682-1|AAM50542.1|  408|Drosophila melanogaster AT10584p pro...    92   9e-19
AY060866-1|AAL28414.1|  278|Drosophila melanogaster GM03574p pro...    92   9e-19
AE014134-1812|AAF52895.2|  408|Drosophila melanogaster CG31873-P...    92   9e-19
BT025010-1|ABE01240.1|  415|Drosophila melanogaster IP02589p pro...    87   3e-17
BT023377-1|AAY55793.1|  188|Drosophila melanogaster IP01917p pro...    29   5.2  
AE014297-4128|AAF56713.2|  391|Drosophila melanogaster CG13976-P...    29   5.2  

>AY118682-1|AAM50542.1|  408|Drosophila melanogaster AT10584p
           protein.
          Length = 408

 Score = 91.9 bits (218), Expect = 9e-19
 Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 14/264 (5%)
 Frame = -1

Query: 755 PLGRT-NSIGNTLFPNG-KGVQKVKQLITASMAIIKGNTVWKDAMKIEQVTDE--SETPN 588
           PLGR+  S    +   G K V  VK L  A   ++K  + ++  ++ + + +E  S +  
Sbjct: 144 PLGRSVQSASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSNSQL 203

Query: 587 RPIYAMASMEWGAFRDTLAKKDKYWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCV 408
           +PI+ +  + WG   D  A KDKYW++GPLR YA+     +    NW+      YTPPC 
Sbjct: 204 KPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFAD--NWSLKTDYVYTPPCP 261

Query: 407 GCTNC--TAKRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQNV 234
           GC +C  T +R E  +     +      + +  +   P  L   + C +  +   +   +
Sbjct: 262 GCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRP--LVKNDNCSKKFEGSAEASQI 319

Query: 233 AMNHQIPALSIFLGRNSYSYTDFVSEGWRRIK-----TNSDPEP---IFARTIEITPKET 78
            +N  +     F    S  +   +  GW  IK     T S   P   + +RTI++ P   
Sbjct: 320 NIN-CVQNKDNFAELES-QFISSLQPGWEFIKQIPEVTCSKILPSLVVKSRTIQLHPDGE 377

Query: 77  DRDTVIEIDKEDFDMKPIKITLMP 6
             +    ID E++D +PIK++++P
Sbjct: 378 MGEKFYSIDGEEYDARPIKVSVVP 401


>AY060866-1|AAL28414.1|  278|Drosophila melanogaster GM03574p
           protein.
          Length = 278

 Score = 91.9 bits (218), Expect = 9e-19
 Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 14/264 (5%)
 Frame = -1

Query: 755 PLGRT-NSIGNTLFPNG-KGVQKVKQLITASMAIIKGNTVWKDAMKIEQVTDE--SETPN 588
           PLGR+  S    +   G K V  VK L  A   ++K  + ++  ++ + + +E  S +  
Sbjct: 14  PLGRSVQSASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSNSQL 73

Query: 587 RPIYAMASMEWGAFRDTLAKKDKYWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCV 408
           +PI+ +  + WG   D  A KDKYW++GPLR YA+     +    NW+      YTPPC 
Sbjct: 74  KPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFAD--NWSLKTDYVYTPPCP 131

Query: 407 GCTNC--TAKRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQNV 234
           GC +C  T +R E  +     +      + +  +   P  L   + C +  +   +   +
Sbjct: 132 GCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRP--LVKNDNCSKKFEGSAEASQI 189

Query: 233 AMNHQIPALSIFLGRNSYSYTDFVSEGWRRIK-----TNSDPEP---IFARTIEITPKET 78
            +N  +     F    S  +   +  GW  IK     T S   P   + +RTI++ P   
Sbjct: 190 NIN-CVQNKDNFAELES-QFISSLQPGWEFIKQIPEVTCSKILPSLVVKSRTIQLHPDGE 247

Query: 77  DRDTVIEIDKEDFDMKPIKITLMP 6
             +    ID E++D +PIK++++P
Sbjct: 248 MGEKFYSIDGEEYDARPIKVSVVP 271


>AE014134-1812|AAF52895.2|  408|Drosophila melanogaster CG31873-PA
           protein.
          Length = 408

 Score = 91.9 bits (218), Expect = 9e-19
 Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 14/264 (5%)
 Frame = -1

Query: 755 PLGRT-NSIGNTLFPNG-KGVQKVKQLITASMAIIKGNTVWKDAMKIEQVTDE--SETPN 588
           PLGR+  S    +   G K V  VK L  A   ++K  + ++  ++ + + +E  S +  
Sbjct: 144 PLGRSVQSASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSNSQL 203

Query: 587 RPIYAMASMEWGAFRDTLAKKDKYWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCV 408
           +PI+ +  + WG   D  A KDKYW++GPLR YA+     +    NW+      YTPPC 
Sbjct: 204 KPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFAD--NWSLKTDYVYTPPCP 261

Query: 407 GCTNC--TAKRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQNV 234
           GC +C  T +R E  +     +      + +  +   P  L   + C +  +   +   +
Sbjct: 262 GCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRP--LVKNDNCSKKFEGSAEASQI 319

Query: 233 AMNHQIPALSIFLGRNSYSYTDFVSEGWRRIK-----TNSDPEP---IFARTIEITPKET 78
            +N  +     F    S  +   +  GW  IK     T S   P   + +RTI++ P   
Sbjct: 320 NIN-CVQNKDNFAELES-QFISSLQPGWEFIKQIPEVTCSKILPSLVVKSRTIQLHPDGE 377

Query: 77  DRDTVIEIDKEDFDMKPIKITLMP 6
             +    ID E++D +PIK++++P
Sbjct: 378 MGEKFYSIDGEEYDARPIKVSVVP 401


>BT025010-1|ABE01240.1|  415|Drosophila melanogaster IP02589p
           protein.
          Length = 415

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 69/259 (26%), Positives = 115/259 (44%), Gaps = 14/259 (5%)
 Frame = -1

Query: 755 PLGRT-NSIGNTLFPNG-KGVQKVKQLITASMAIIKGNTVWKDAMKIEQVTDE--SETPN 588
           PLGR+  S    +   G K V  VK L  A   ++K  + ++  ++ + + +E  S +  
Sbjct: 160 PLGRSVQSASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSNSQL 219

Query: 587 RPIYAMASMEWGAFRDTLAKKDKYWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCV 408
           +PI+ +  + WG   D  A KDKYW++GPLR YA+     +    NW+      YTPPC 
Sbjct: 220 KPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFAD--NWSLKTDYVYTPPCP 277

Query: 407 GCTNC--TAKRPEVKRKWFFVSSTEAAGQLDQTKILNPECLTSKELCFRTCDFKIKTQNV 234
           GC +C  T +R E  +     +      + +  +   P  L   + C +  +   +   +
Sbjct: 278 GCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRP--LVKNDNCSKKFEGSAEASQI 335

Query: 233 AMNHQIPALSIFLGRNSYSYTDFVSEGWRRIK-----TNSDPEP---IFARTIEITPKET 78
            +N  +     F    S  +   +  GW  IK     T S   P   + +RTI++ P   
Sbjct: 336 NIN-CVQNKDNFAELES-QFISSLQPGWEFIKQIPEVTCSKILPSLVVKSRTIQLHPDGE 393

Query: 77  DRDTVIEIDKEDFDMKPIK 21
             +    ID E++D +PIK
Sbjct: 394 MGEKFYSIDGEEYDARPIK 412


>BT023377-1|AAY55793.1|  188|Drosophila melanogaster IP01917p
           protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -1

Query: 518 YWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCVGCTNCTAKRPEVKRKWFFVSSTE 339
           YW Y    E+       Y +++   C   ++   PC  CT C A + +    ++ V++  
Sbjct: 53  YWLYLSRVEHTRVAVQHYVATVE--CIKLLEIVVPCYLCTRCDAMQRKFLSMFYTVTTDR 110

Query: 338 AAGQLD 321
            + QL+
Sbjct: 111 RSSQLN 116


>AE014297-4128|AAF56713.2|  391|Drosophila melanogaster CG13976-PA
           protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -1

Query: 518 YWFYGPLREYAAYIFNGYKSSLNWNCSGTIKYTPPCVGCTNCTAKRPEVKRKWFFVSSTE 339
           YW Y    E+       Y +++   C   ++   PC  CT C A + +    ++ V++  
Sbjct: 256 YWLYLSRVEHTRVAVQHYVATVE--CIKLLEIVVPCYLCTRCDAMQRKFLSMFYTVTTDR 313

Query: 338 AAGQLD 321
            + QL+
Sbjct: 314 RSSQLN 319


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,543,610
Number of Sequences: 53049
Number of extensions: 757109
Number of successful extensions: 1974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)