Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e17
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    28   8.2  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    28   8.2  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    28   8.2  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    28   8.2  

>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 260 DFKIKTQNVAMNHQI-PALSIFLGRNSYSYTDFVSEGWRRIKTNSDPEPIFARTIEITPK 84
           D KI+T      H + P  S    R+SY  ++ VS   ++ +  +D E       E   K
Sbjct: 175 DVKIETGPTTRTHMVHPTSSHIRSRSSYGRSNTVSMFAQQARERADREEKDRDYKEWMQK 234

Query: 83  ETDRDTVIEID 51
           E DR+T + ++
Sbjct: 235 EKDRETELGLE 245


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 506 GPLREYAAYIFNGYKSSLNWNCSGTIKY 423
           G L +Y   I  GYK++  WNC    +Y
Sbjct: 274 GGLLKYCHLIIRGYKAAKPWNCRKLERY 301


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 506 GPLREYAAYIFNGYKSSLNWNCSGTIKY 423
           G L +Y   I  GYK++  WNC    +Y
Sbjct: 303 GGLLKYCHLIIRGYKAAKPWNCRKLERY 330


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 506 GPLREYAAYIFNGYKSSLNWNCSGTIKY 423
           G L +Y   I  GYK++  WNC    +Y
Sbjct: 290 GGLLKYCHLIIRGYKAAKPWNCRKLERY 317


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 506 GPLREYAAYIFNGYKSSLNWNCSGTIKY 423
           G L +Y   I  GYK++  WNC    +Y
Sbjct: 298 GGLLKYCHLIIRGYKAAKPWNCRKLERY 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,679
Number of Sequences: 27780
Number of extensions: 397839
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)