Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e14
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    35   0.014
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.2  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   2.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.0  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   6.6  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 180  WPNVGGAVRAKLPPSLNSVGGPTTFRVPALVCCNSLTNPISFTCSSSKTSFIVLIG 347
            W  V     + L  SLNS    T++R+  + C + ++N +S  C   K SFIVL+G
Sbjct: 1200 WSQVRALALSLLSDSLNS----TSYRLLGISCSDMVSNILSNECLPIKESFIVLLG 1251


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 271 TSAGTLKVVGPPTEFSEGGNLARTAPP 191
           T A   K++ PP+ +  G +  +T PP
Sbjct: 326 TDASKTKIIQPPSSYGTGSSAGKTNPP 352


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 319 DDEHVKEIGLVKELQHTSAGTLKV-VGPPTEFSEGGNLARTAPPTLGQHTTDILSDFLGY 143
           +DE  K    V E   T +G+ K  +G   +  E GN   T  P + + +  I  D L Y
Sbjct: 337 NDEEQKPSIAVGEFAETDSGSEKSKIGTSIDGIESGNNEYTEQPDIQESSLSICEDRLRY 396

Query: 142 HESKIQGLFEKNI 104
              ++  L++ ++
Sbjct: 397 TLKQLGILYDGDV 409


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 169 DILSDFLGYHESKIQGLFEKNIIR*CFSYLLSVS 68
           DI  DFL +  +K Q +F  +    C SY+L V+
Sbjct: 59  DIFQDFLNFIITKNQEMFSMDCNSICKSYVLKVA 92


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 562 GYMVIGTGSNPQFADFCKLINREDLITDERFKDNSNRVENR 440
           G + +   SNP  A F  L +RE  I  ER +DN   +EN+
Sbjct: 249 GVVFVFIPSNPSKARF--LSSREKRIALERVRDNRTGLENK 287


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 276 CNSLTNPISFTCSSSKTSFIVLIGPLGKVASLNKAL 383
           C+   NP +F  SSSK S   L+G  G + S+   L
Sbjct: 331 CDVNRNPEAFPVSSSKGSIGHLLGAAGAIESVYTVL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,173
Number of Sequences: 5004
Number of extensions: 62325
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)