Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e14
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87...    30   1.7  
10_07_0148 + 13413078-13414295                                         30   2.3  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    29   3.0  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    28   9.2  

>02_01_0118 +
           870911-871203,872559-872679,872975-873092,873218-873354,
           873583-873684,873862-873954,875047-875119,875213-875478
          Length = 400

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 598 NLVPYQAFKTKDGYM-VIGTGSNPQFADFCKLINRED 491
           +L+PY  F  ++G    +   S+PQ  D+C+++  ED
Sbjct: 301 HLIPYFIFDAQEGSRSTLFAASDPQVPDYCEMLKSED 337


>10_07_0148 + 13413078-13414295
          Length = 405

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 192 GGAVRAKLPPSLNSVGGPTTFRVPALVCCNSLTNPISFTCSSSKTSFIVL 341
           GG V A LPP+LNS+G     RV A+           ++ SS +++F +L
Sbjct: 214 GGVVAAGLPPNLNSIGAA---RVAAIGREEGTAATSEYSSSSFRSNFTLL 260


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 207 PVLHPLHWANIQQTFYPISLVTMRVKFKDYSKRTSLDNAS-LICY 76
           P+ HP H   ++Q    + L  +RVK     +    DN S L CY
Sbjct: 81  PIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCY 125


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 292 LVKELQHTSAGTLKVVGPPTEFSEGGNLARTAPPTLGQHTT 170
           L K   H  A  L+++ PP +  E  N A + PPT    +T
Sbjct: 292 LEKHAGHV-ASHLRILPPPNKVLENDNAAASRPPTASSQST 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,512,989
Number of Sequences: 37544
Number of extensions: 388054
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)