Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e13
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   4.1  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   7.1  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   9.4  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 457 IGDMLSKTSSFFTDNLSQDDPYI 389
           + + +SKT++  +DNL +DDPYI
Sbjct: 568 VDNSISKTATIVSDNL-KDDPYI 589


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 223 RIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNN 92
           +IQP   F    Q+  N+  +PY  E+E+L L  +  GT + NN
Sbjct: 183 QIQPLSNFDISQQEYLNNTRIPY--ENEDLHLQHITQGTTDDNN 224


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
 Frame = -3

Query: 772  TLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSP-------QELEKFLNFIEKTGPYDI 614
            T D + +   EF++L    + +++   D+  ++SP       + L+K  N +  TG    
Sbjct: 825  TEDGISMEGPEFRSLSDEKRLEILPKLDVLARSSPLDKQLLIEGLQKLGNVVAVTGDGTN 884

Query: 613  ILDAL---NVSYSIGKQSQATGAKALHIVV 533
               AL   NV +S+GK       +A  I++
Sbjct: 885  DAPALKKANVGFSMGKSGTEVAKEASDIIL 914


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 636 SIKFRNFSNSCGDVFRNKSEPI 701
           SI    F   C D+FRN  EP+
Sbjct: 294 SITRARFEELCADLFRNTMEPV 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,914
Number of Sequences: 5004
Number of extensions: 76560
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)