Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e13
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1702 + 35475019-35475564,35476105-35476116,35476156-354762... 40 0.002
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 38 0.007
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 31 0.80
06_01_0795 - 5929137-5929918,5930038-5930398 31 1.4
06_01_0794 - 5923191-5923299,5923977-5924655,5924754-5925102 31 1.4
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 30 1.8
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680... 29 3.2
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 4.3
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 29 4.3
12_02_1109 + 26151421-26153601 28 7.4
05_06_0101 - 25581800-25581943,25582030-25582095,25582268-255823... 28 7.4
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 7.4
>04_04_1702 +
35475019-35475564,35476105-35476116,35476156-35476245,
35476347-35476528,35476904-35477024,35477076-35477159
Length = 344
Score = 39.9 bits (89), Expect = 0.002
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 7/184 (3%)
Frame = -3
Query: 790 CQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDII 611
C C + L C+ + E + ++ I F+K + ++E GP+D +
Sbjct: 143 CHRCGEKLVCIDIDPSETHSFAESVAQIAINRDANFVKFQIY----CIKWLECHGPFDAV 198
Query: 610 LDALNVS-YSIGKQSQATGAKALHIVVEYFLNQNKKVLILGRKHI------LTWKKNLIG 452
+DA NV Y+ S + ++ + ++ ++IL + + L + L+
Sbjct: 199 IDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIILHKNRVNGGPAKLPQNQKLLE 258
Query: 451 DMLSKTSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQ 272
+ + T S DD Y + AA+ S +V+ D +R H+F+L F RW+
Sbjct: 259 SWQRAGALYATPPGSNDDWYWLYAAVIYRSL--LVTNDEMRDHLFQLLG---TSFFPRWK 313
Query: 271 WQHQ 260
HQ
Sbjct: 314 ENHQ 317
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 38.3 bits (85), Expect = 0.007
Identities = 34/117 (29%), Positives = 52/117 (44%)
Frame = -3
Query: 427 FFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQHQWMLF 248
+ T S DD Y + AAI +V+ D +R H F+L + R F +W+ +HQ
Sbjct: 585 YATPTGSNDDWYWLYAAI--RCKCLMVTNDEMRDHTFQLLE---RDFFPKWKERHQVRFN 639
Query: 247 KTNNKHGLRIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNNWLCLT 77
++ L++ PP + N WH+P E+ L D T WLC+T
Sbjct: 640 FEDSCVTLQMPPPCSVV-IQESENGQWHIPVVSEEGSL----EKDRT-----WLCVT 686
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 649 LNFIEKTGPYDIILDALNVSYSIGKQSQATGAKALHIVVEY--FLNQNKKVLILGRKHIL 476
++ IE ++ D L S ++S+ G H+ V Y FLN + ++L I
Sbjct: 285 MDLIESLDWCKLVFDWLMEHISKIEKSKTFGGCLFHLAVNYLDFLNFGSQKVLLDTPRIK 344
Query: 475 TWKKNLIGD 449
WK+++I D
Sbjct: 345 VWKRSMIKD 353
>06_01_0795 - 5929137-5929918,5930038-5930398
Length = 380
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 12 TQPNIEIWCPIINNI*SHRQFGVKHNQLFRFGVPSLTIFSPNSSS 146
TQ IE W PI++ + HR+ + Q++ G S T F PN +
Sbjct: 86 TQQQIEAWKPIVDAV--HRKGALFFLQIWHVGRVSTTDFQPNGQA 128
>06_01_0794 - 5923191-5923299,5923977-5924655,5924754-5925102
Length = 378
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 12 TQPNIEIWCPIINNI*SHRQFGVKHNQLFRFGVPSLTIFSPNSSS 146
TQ IE W PI++ + HR+ + Q++ G S T F PN +
Sbjct: 82 TQQQIEAWKPIVDAV--HRKGALFFLQIWHVGRVSTTDFQPNGQA 124
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 649 LNFIEKTGPYDIILDALNVSYSIGKQSQATGAKALHIVVEY--FLNQNKKVLILGRKHIL 476
++ IE ++ D L S ++S+ G H+ V Y FLN + ++L I
Sbjct: 288 MDLIESLDWCKLVFDWLMEHISKIEKSKTFGGCLFHLAVNYLDFLNFGSQKVLLDTPIIK 347
Query: 475 TWKKNLIGD 449
WK+++I D
Sbjct: 348 VWKRSMIKD 356
>04_03_0497 +
16566601-16566696,16567026-16567102,16567903-16568047,
16568265-16568309,16568338-16569294,16569603-16569896,
16571129-16571242,16571826-16571913,16571995-16572050,
16572250-16572304,16572417-16572460
Length = 656
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 282 LNNILKYSSCNLNMCPRNRSFDTISV*EPLNMAAV 386
L+NIL S+CN N C N+ F I+ LN V
Sbjct: 388 LDNILPISTCNSNNCLENQGFPEIAQHMTLNEEVV 422
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 577 KQSQATGAKALHIVVEY--FLNQNKKVLILGRKHILTWKKNLIGD 449
++S+ G H+ V Y FLN + ++L I WK+++I D
Sbjct: 334 EKSKTFGGCLFHLAVNYLDFLNFGSQKVLLDTPRIKVWKRSMIKD 378
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 649 LNFIEKTGPYDIILDALNVSYSIGKQSQATGAKALHIVVEY--FLNQNKKVLILGRKHIL 476
++ IE ++ D L S ++ + G LH+ V Y FLN + ++L I
Sbjct: 320 MDLIESLDWCKLVFDWLMDHISKLEKLKTFGGCLLHLTVNYLDFLNFGSQKVLLDTPRIK 379
Query: 475 TWKKNLIGD 449
WK+ +I D
Sbjct: 380 VWKRYMIKD 388
>12_02_1109 + 26151421-26153601
Length = 726
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 667 QELEKFLN-FIEKTGPYDIILDALNVSYSIGKQSQATGAKALHIVVEYFLNQ 515
QE++ N +EK + + +A ++ Y I + + A+ HI++E FLN+
Sbjct: 613 QEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNR 664
>05_06_0101 -
25581800-25581943,25582030-25582095,25582268-25582390,
25582635-25582722,25582823-25582920,25583088-25583147,
25583228-25583288,25583374-25583505,25583957-25584167,
25584515-25584648,25584907-25584989,25585077-25585142,
25585552-25585607,25585701-25585800,25586313-25586421,
25586499-25586653,25586767-25586937,25587129-25587212,
25587261-25587345,25587431-25587477,25587912-25588124
Length = 761
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -3
Query: 736 KTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDIILDALNVSYSIGKQS 569
KTL + KL+ G++ + P+ L KF+ EK D+ DA N + G QS
Sbjct: 271 KTLMARQIGKLLNGNEPKIVNGPEVLSKFVGETEK-NVRDLFADAENDQKTRGDQS 325
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 697 GSDLFLKTSPQELEKFLNFIEKTGPY-DIILDALNVSYSIGKQSQATGAKALHIVVEY 527
G + KT +E+EK+ F E+ GPY + +N S K+ G +A + +++
Sbjct: 257 GFEYSTKTLKEEVEKYEKFAERLGPYITDTVHFMNQSILQNKKILVEGGQATMLDIDF 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,517
Number of Sequences: 37544
Number of extensions: 432648
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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