Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e13
         (795 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032221-1|AAH32221.1|  583|Homo sapiens KIAA0391 protein.            155   2e-37
AB002389-1|BAA20845.2|  571|Homo sapiens KIAA0391 protein.            155   2e-37
BC044580-1|AAH44580.1|  583|Homo sapiens KIAA0391 protein.            153   9e-37
BC053647-1|AAH53647.1|  570|Homo sapiens FERM domain containing ...    31   6.3  

>BC032221-1|AAH32221.1|  583|Homo sapiens KIAA0391 protein.
          Length = 583

 Score =  155 bits (375), Expect = 2e-37
 Identities = 83/242 (34%), Positives = 137/242 (56%), Gaps = 4/242 (1%)
 Frame = -3

Query: 793  RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
            +C  C KT++ ++LS EE++ L+  I   +I G D + KT+PQEL++F NFI+   P+D+
Sbjct: 347  QCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDV 406

Query: 613  ILDALNVSYSIGKQSQATGAKALHIVVEYFLNQNKKVLILGRKHILT----WKKNLIGDM 446
            ++D LNV+    K  ++   + L  VV     +N ++L+LGRKH+L     W ++ + ++
Sbjct: 407  VIDGLNVAKMFPKVRES---QLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEV 463

Query: 445  LSKTSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQ 266
              + S FF D++S+DDP+++ A + SG+H   +++DL+R H   L D   + LF +WQ  
Sbjct: 464  QKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQG 523

Query: 265  HQWMLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNNWL 86
            HQ  +        L  Q  L +    Q   +SWH+PY   DE+L +   +   P    WL
Sbjct: 524  HQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY---DEDL-VERCSCEVP--TKWL 577

Query: 85   CL 80
            CL
Sbjct: 578  CL 579


>AB002389-1|BAA20845.2|  571|Homo sapiens KIAA0391 protein.
          Length = 571

 Score =  155 bits (375), Expect = 2e-37
 Identities = 83/242 (34%), Positives = 137/242 (56%), Gaps = 4/242 (1%)
 Frame = -3

Query: 793  RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
            +C  C KT++ ++LS EE++ L+  I   +I G D + KT+PQEL++F NFI+   P+D+
Sbjct: 335  QCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDV 394

Query: 613  ILDALNVSYSIGKQSQATGAKALHIVVEYFLNQNKKVLILGRKHILT----WKKNLIGDM 446
            ++D LNV+    K  ++   + L  VV     +N ++L+LGRKH+L     W ++ + ++
Sbjct: 395  VIDGLNVAKMFPKVRES---QLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEV 451

Query: 445  LSKTSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQ 266
              + S FF D++S+DDP+++ A + SG+H   +++DL+R H   L D   + LF +WQ  
Sbjct: 452  QKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQG 511

Query: 265  HQWMLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNNWL 86
            HQ  +        L  Q  L +    Q   +SWH+PY   DE+L +   +   P    WL
Sbjct: 512  HQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY---DEDL-VERCSCEVP--TKWL 565

Query: 85   CL 80
            CL
Sbjct: 566  CL 567


>BC044580-1|AAH44580.1|  583|Homo sapiens KIAA0391 protein.
          Length = 583

 Score =  153 bits (370), Expect = 9e-37
 Identities = 82/242 (33%), Positives = 137/242 (56%), Gaps = 4/242 (1%)
 Frame = -3

Query: 793  RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
            +C  C KT++ ++LS EE++ L+  I   +I G D + KT+PQEL++F NFI+   P+D+
Sbjct: 347  QCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDV 406

Query: 613  ILDALNVSYSIGKQSQATGAKALHIVVEYFLNQNKKVLILGRKHILT----WKKNLIGDM 446
            ++D LNV+    K  ++   + L  VV     ++ ++L+LGRKH+L     W ++ + ++
Sbjct: 407  VIDGLNVAKMFPKVRES---QLLLNVVSQLAKRSLRLLVLGRKHMLRRSSQWSRDEMEEV 463

Query: 445  LSKTSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQ 266
              + S FF D++S+DDP+++ A + SG+H   +++DL+R H   L D   + LF +WQ  
Sbjct: 464  QKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQG 523

Query: 265  HQWMLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNNWL 86
            HQ  +        L  Q  L +    Q   +SWH+PY   DE+L +   +   P    WL
Sbjct: 524  HQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY---DEDL-VERCSCEVP--TKWL 577

Query: 85   CL 80
            CL
Sbjct: 578  CL 579


>BC053647-1|AAH53647.1|  570|Homo sapiens FERM domain containing 5
           protein.
          Length = 570

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 340 DLLRGHIFKLQDEYLRILFKRWQWQHQWMLFKTNNKHGLRIQPPLVFTPC 191
           DLL  H+  L+ +Y  I F     Q  W+ F  +    LR QPP  FT C
Sbjct: 44  DLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPP--FTMC 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,411,035
Number of Sequences: 237096
Number of extensions: 2525998
Number of successful extensions: 4673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4667
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)