Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e13
(795 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015952-1|AAV36837.1| 544|Drosophila melanogaster SD17694p pro... 180 2e-45
AY071486-1|AAL49108.1| 364|Drosophila melanogaster RE55427p pro... 180 2e-45
AE014298-870|AAF46147.1| 544|Drosophila melanogaster CG15896-PA... 180 2e-45
AY089239-1|AAL89977.1| 319|Drosophila melanogaster AT02809p pro... 32 0.79
AE014134-371|AAN10418.1| 319|Drosophila melanogaster CG31682-PA... 32 0.79
BT001533-1|AAN71288.1| 452|Drosophila melanogaster RE07647p pro... 29 5.5
AY051445-1|AAK92869.1| 453|Drosophila melanogaster GH11459p pro... 29 5.5
AJ344346-1|CAC87639.1| 387|Drosophila melanogaster inwardly rec... 29 5.5
AJ344345-1|CAC87638.1| 376|Drosophila melanogaster inwardly rec... 29 5.5
AE014297-3332|AAN13948.1| 437|Drosophila melanogaster CG4370-PB... 29 5.5
AE014297-3331|AAF56139.3| 453|Drosophila melanogaster CG4370-PA... 29 5.5
>BT015952-1|AAV36837.1| 544|Drosophila melanogaster SD17694p
protein.
Length = 544
Score = 180 bits (438), Expect = 2e-45
Identities = 83/214 (38%), Positives = 133/214 (62%), Gaps = 1/214 (0%)
Frame = -3
Query: 793 RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
+CQSC + L + +SDEEF+ L ++++I D+F +++P+E+ +F F+EKT PYD
Sbjct: 293 KCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYDC 352
Query: 613 ILDALNVSYSIG-KQSQATGAKALHIVVEYFLNQNKKVLILGRKHILTWKKNLIGDMLSK 437
++D LNV+YS G K++ AK + VV +F Q+K+VL+LGR+H+ W K + +
Sbjct: 353 VIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQAMHYVHCN 412
Query: 436 TSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQHQW 257
S F T NLS DDP+++ A + SG TD S+DL+R H F L E L+ +F+RWQ +HQ+
Sbjct: 413 ASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFHLGTE-LKPIFRRWQQEHQF 471
Query: 256 MLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPY 155
L + ++ P+ C + ++WH+PY
Sbjct: 472 SLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPY 505
>AY071486-1|AAL49108.1| 364|Drosophila melanogaster RE55427p
protein.
Length = 364
Score = 180 bits (438), Expect = 2e-45
Identities = 83/214 (38%), Positives = 133/214 (62%), Gaps = 1/214 (0%)
Frame = -3
Query: 793 RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
+CQSC + L + +SDEEF+ L ++++I D+F +++P+E+ +F F+EKT PYD
Sbjct: 113 KCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYDC 172
Query: 613 ILDALNVSYSIG-KQSQATGAKALHIVVEYFLNQNKKVLILGRKHILTWKKNLIGDMLSK 437
++D LNV+YS G K++ AK + VV +F Q+K+VL+LGR+H+ W K + +
Sbjct: 173 VIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQAMHYVHCN 232
Query: 436 TSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQHQW 257
S F T NLS DDP+++ A + SG TD S+DL+R H F L E L+ +F+RWQ +HQ+
Sbjct: 233 ASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFHLGTE-LKPIFRRWQQEHQF 291
Query: 256 MLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPY 155
L + ++ P+ C + ++WH+PY
Sbjct: 292 SLVTQTQTGQIIVREPVRHRLCAHQVADTWHVPY 325
>AE014298-870|AAF46147.1| 544|Drosophila melanogaster CG15896-PA
protein.
Length = 544
Score = 180 bits (438), Expect = 2e-45
Identities = 83/214 (38%), Positives = 133/214 (62%), Gaps = 1/214 (0%)
Frame = -3
Query: 793 RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDI 614
+CQSC + L + +SDEEF+ L ++++I D+F +++P+E+ +F F+EKT PYD
Sbjct: 293 KCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYDC 352
Query: 613 ILDALNVSYSIG-KQSQATGAKALHIVVEYFLNQNKKVLILGRKHILTWKKNLIGDMLSK 437
++D LNV+YS G K++ AK + VV +F Q+K+VL+LGR+H+ W K + +
Sbjct: 353 VIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQAMHYVHCN 412
Query: 436 TSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQWQHQW 257
S F T NLS DDP+++ A + SG TD S+DL+R H F L E L+ +F+RWQ +HQ+
Sbjct: 413 ASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFHLGTE-LKPIFRRWQQEHQF 471
Query: 256 MLFKTNNKHGLRIQPPLVFTPCPQKNNNSWHLPY 155
L + ++ P+ C + ++WH+PY
Sbjct: 472 SLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPY 505
>AY089239-1|AAL89977.1| 319|Drosophila melanogaster AT02809p
protein.
Length = 319
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 273 CHLLNNILKYSSCNLNMCPRNRSFDTISV*EPLNMAAVMIYGSSCDKLSVKKLLVF---D 443
CH L I+KY + N N +FD ++ + N A + + C+++ + +V+
Sbjct: 74 CHKLGGIMKYGFPSTNDITINETFDFVTSFDRRNSAILWM----CERVDLSNRVVYGDST 129
Query: 444 SMSPIKFFFQ---VKMCFLPNINTFL 512
S++P F Q ++ FL NI FL
Sbjct: 130 SVAPAGAFGQSEAARVFFLSNIRPFL 155
>AE014134-371|AAN10418.1| 319|Drosophila melanogaster CG31682-PA
protein.
Length = 319
Score = 32.3 bits (70), Expect = 0.79
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 273 CHLLNNILKYSSCNLNMCPRNRSFDTISV*EPLNMAAVMIYGSSCDKLSVKKLLVF---D 443
CH L I+KY + N N +FD ++ + N A + + C+++ + +V+
Sbjct: 74 CHKLGGIMKYGFPSTNDITINETFDFVTSFDRRNSAILWM----CERVDLSNRVVYGDST 129
Query: 444 SMSPIKFFFQ---VKMCFLPNINTFL 512
S++P F Q ++ FL NI FL
Sbjct: 130 SVAPAGAFGQSEAARVFFLSNIRPFL 155
>BT001533-1|AAN71288.1| 452|Drosophila melanogaster RE07647p
protein.
Length = 452
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 98 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 134
>AY051445-1|AAK92869.1| 453|Drosophila melanogaster GH11459p
protein.
Length = 453
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 99 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 135
>AJ344346-1|CAC87639.1| 387|Drosophila melanogaster inwardly
rectifying K+ channelprotein protein.
Length = 387
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 33 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 69
>AJ344345-1|CAC87638.1| 376|Drosophila melanogaster inwardly
rectifying K+ channelprotein protein.
Length = 376
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 8 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 44
>AE014297-3332|AAN13948.1| 437|Drosophila melanogaster CG4370-PB,
isoform B protein.
Length = 437
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 83 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 119
>AE014297-3331|AAF56139.3| 453|Drosophila melanogaster CG4370-PA,
isoform A protein.
Length = 453
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 379 AIFSGSHTDIVSKDLLRGHIFKLQDEYLRILFKRWQW 269
A+F ++V K L R + LQD Y ++ +W+W
Sbjct: 99 AVFKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRW 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,779,826
Number of Sequences: 53049
Number of extensions: 772178
Number of successful extensions: 1846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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