Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e13
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autopha...    31   1.3  
U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF016681-9|AAB66172.2|  225|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform a protein.
          Length = 273

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -3

Query: 559 GAKALHIVVE-YFLNQNKKVLILGRKH---ILTWKKNLIGDMLSKTSSFFTDNLSQDDPY 392
           G +  HI +  Y  NQ  K  ++  KH    L      + D+LS +SS  TD+ S+  P 
Sbjct: 177 GNEFAHIPLRVYVKNQAFKQALITAKHPDGSLRTIGEAVSDVLSSSSSSSTDSQSEHPPR 236

Query: 391 IITAAIFSGSHTDIV 347
           +I+  I    HT ++
Sbjct: 237 LISHGIDIPHHTPLI 251


>U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical
           protein K10C2.3 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 454 GDMLSKTSSFFTDNLSQDDPYIITAAIFSGSHTDIVSKDL 335
           G  L +TS+FF  NL+   P  +   +   S  DIV  D+
Sbjct: 78  GQTLEQTSTFFVANLTMGTPGQLFTVVIDTSTADIVIPDM 117


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -3

Query: 793 RCQSCSKTLDCLKLSDEEFKTLQSNIKDKLIIGSDL---FLKTSP--QELEKFLNFIEKT 629
           R Q+C+  L  LKLS +E K    ++ +K  +  D+    LK  P  +EL +    ++K 
Sbjct: 432 RYQNCTIMLSKLKLSHKEIKQAMMSMDEKCKLPKDMIEQMLKFMPTKEELTQINESVQKH 491

Query: 628 GPYDIILDALNVSYSI 581
           G   ++  A    Y I
Sbjct: 492 GSPTVLALADRYMYEI 507


>AF016681-9|AAB66172.2|  225|Caenorhabditis elegans Hypothetical
           protein F22E5.6 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 748 DEEFKTL-QSNIKDKLIIGSDLFLKTSPQELEKFLNFIEKTGPYDIILDALNVSYSIGKQ 572
           D  FKTL +++I  +    + +F+  SP+  EK LN++      D++ ++      I K+
Sbjct: 28  DGFFKTLLETDIPIQKDDSNCIFIDRSPRHFEKILNYLRDGADVDLLPESEKEVREILKE 87

Query: 571 SQ 566
           +Q
Sbjct: 88  AQ 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,366,410
Number of Sequences: 27780
Number of extensions: 416661
Number of successful extensions: 1084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)