Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e11
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    30   2.5  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    29   3.3  
08_01_1047 - 10616113-10616669,10616727-10616953,10617564-106176...    29   4.4  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    29   4.4  
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634...    28   7.6  

>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 399 PLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKHVEKALHK 247
           P++  P+   I P SCP+      +NN   E TL+L + S +K   +A  K
Sbjct: 259 PILEPPSQPPIKPKSCPSSPQDVVLNN-FQEITLILHDTSFDKENLQAKDK 308


>06_03_0107 +
           16709543-16709640,16712555-16713408,16715051-16715193,
           16715312-16715573,16715835-16716150,16716257-16716383,
           16717088-16717149,16717291-16717374,16717438-16717494,
           16717705-16717768,16718057-16718152
          Length = 720

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = -2

Query: 534 AALYCSHLRQLITSIGDFYGR-GNKFPPSVPESLSKYEIVVEPEAGPLMVSPTGQFITPS 358
           A +Y  H  +  T     +G+ G  F        SK EIVV   AG      +G F  P+
Sbjct: 453 AIVYMQHFCREQTQDVLLWGQYGESFNEDATLHKSKDEIVVAIFAGLTAGKFSGSFFDPN 512

Query: 357 SCPADELIAYINNHLDEATLLLTEYSINKHVE 262
            CP  + +  I+  L  A   +TE S +   E
Sbjct: 513 KCPPIQRMQNISTSLSPAA--ITEASSSSATE 542


>08_01_1047 -
           10616113-10616669,10616727-10616953,10617564-10617649,
           10617949-10618080,10618867-10618959
          Length = 364

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 762 DNLQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKV 643
           DN+QGR I+ G   G     D YL + D +  W S++  +
Sbjct: 100 DNMQGRVISSGHLAG----WDTYLLMTDDQIHWFSIVNSL 135


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
 Frame = -2

Query: 702  DVYLNIIDVRNEWLSLIKKVRQEDSALTMIPSYEKALSSILRDIHIRRRKFMPKVSAALY 523
            +V + + ++   W  L+    +  +ALT++  +   L+  L DIHI        V   + 
Sbjct: 701  NVIVTLRNLHYSWHDLVSSGNK--NALTILSLWAPVLAIYLMDIHIWYTLLSALVGGVMG 758

Query: 522  CSHLRQLITSIGDFYGRGNKFPPSVPESLSKYEIVVEPEA-GPLMVSPTGQFITP 361
                   I SI   + R   FP +  ++LS   I   P A GP +        +P
Sbjct: 759  ARDRLGEIRSIEMLHKRFESFPEAFAKTLSPLRISNGPVAQGPEITKMHASIFSP 813


>03_02_0900 -
           12262149-12262565,12262924-12263061,12263387-12263446,
           12263557-12263619,12264181-12264243,12264420-12264482,
           12265076-12265153,12265673-12266080
          Length = 429

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 333 AYINNHLDEATLLLTEYSIN 274
           AY++NHL+EA + L E +IN
Sbjct: 323 AYVSNHLEEAPMQLPETTIN 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,733
Number of Sequences: 37544
Number of extensions: 384475
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)