Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e11
         (811 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071237-1|AAL48859.1|  485|Drosophila melanogaster RE27477p pro...   221   7e-58
AE014296-1059|AAF50704.1|  485|Drosophila melanogaster CG13295-P...   221   7e-58
AY069165-1|AAL39310.1|  491|Drosophila melanogaster GH19593p pro...   156   3e-38
AL133503-2|CAB63508.1|  491|Drosophila melanogaster EG:BACH48C10...   156   3e-38
AE014298-384|AAF45772.2|  491|Drosophila melanogaster CG2854-PA ...   156   3e-38
AY069653-1|AAL39798.1|  713|Drosophila melanogaster LD42374p pro...    29   7.5  
AE013599-1154|AAF58768.1|  713|Drosophila melanogaster CG11883-P...    29   7.5  
AE013599-1153|AAF58767.1|  732|Drosophila melanogaster CG11883-P...    29   7.5  

>AY071237-1|AAL48859.1|  485|Drosophila melanogaster RE27477p
           protein.
          Length = 485

 Score =  221 bits (541), Expect = 7e-58
 Identities = 111/252 (44%), Positives = 165/252 (65%)
 Frame = -2

Query: 807 LQSLVSLATQHSNIMDNLQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKVRQEDS 628
           L++L  L+  H   M +L+GR +    FTG+SL+G V L   DV + W+  IK +   D+
Sbjct: 235 LKTLERLSNTHLLEMASLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDA 294

Query: 627 ALTMIPSYEKALSSILRDIHIRRRKFMPKVSAALYCSHLRQLITSIGDFYGRGNKFPPSV 448
            L ++P YE+ LS +L +I I RRKFMPK  A+ Y S+L ++ TS+ D+ G+  K+PP  
Sbjct: 295 YLKVVPVYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGK-QKYPPEW 353

Query: 447 PESLSKYEIVVEPEAGPLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKH 268
           P++L ++ IVVE EAGPLMVSPTGQFITP++CP   L+ +I+ +L+ A   + +Y+ +KH
Sbjct: 354 PKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLELARERMKKYAQDKH 413

Query: 267 VEKALHKEVKERFGLLELHKDDSITPGLMISCCQRLLTRTDKLNANLRGNILYVTHYYSV 88
           +E+ L     ++  L  L KDD+ITP  MI+  + L     K    L+G  L++THYYSV
Sbjct: 414 IEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLYQLQLK---ELQGCKLHITHYYSV 470

Query: 87  LTEGILCIPWNF 52
           LT+G++CIPW+F
Sbjct: 471 LTDGVVCIPWDF 482


>AE014296-1059|AAF50704.1|  485|Drosophila melanogaster CG13295-PA
           protein.
          Length = 485

 Score =  221 bits (541), Expect = 7e-58
 Identities = 111/252 (44%), Positives = 165/252 (65%)
 Frame = -2

Query: 807 LQSLVSLATQHSNIMDNLQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKVRQEDS 628
           L++L  L+  H   M +L+GR +    FTG+SL+G V L   DV + W+  IK +   D+
Sbjct: 235 LKTLERLSNTHLLEMASLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDA 294

Query: 627 ALTMIPSYEKALSSILRDIHIRRRKFMPKVSAALYCSHLRQLITSIGDFYGRGNKFPPSV 448
            L ++P YE+ LS +L +I I RRKFMPK  A+ Y S+L ++ TS+ D+ G+  K+PP  
Sbjct: 295 YLKVVPVYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGK-QKYPPEW 353

Query: 447 PESLSKYEIVVEPEAGPLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKH 268
           P++L ++ IVVE EAGPLMVSPTGQFITP++CP   L+ +I+ +L+ A   + +Y+ +KH
Sbjct: 354 PKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLELARERMKKYAQDKH 413

Query: 267 VEKALHKEVKERFGLLELHKDDSITPGLMISCCQRLLTRTDKLNANLRGNILYVTHYYSV 88
           +E+ L     ++  L  L KDD+ITP  MI+  + L     K    L+G  L++THYYSV
Sbjct: 414 IEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLYQLQLK---ELQGCKLHITHYYSV 470

Query: 87  LTEGILCIPWNF 52
           LT+G++CIPW+F
Sbjct: 471 LTDGVVCIPWDF 482


>AY069165-1|AAL39310.1|  491|Drosophila melanogaster GH19593p
           protein.
          Length = 491

 Score =  156 bits (379), Expect = 3e-38
 Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 1/236 (0%)
 Frame = -2

Query: 756 LQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKVRQEDSALTMIPSYEKALSSILR 577
           L+ R +    +TG+SL+GDV L   D  + WL+ + ++R  +  L ++P YEKALS++L 
Sbjct: 255 LRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLRLVPLYEKALSAVLL 314

Query: 576 DIHIRRRKFM-PKVSAALYCSHLRQLITSIGDFYGRGNKFPPSVPESLSKYEIVVEPEAG 400
            I I RR+   P   A  Y   LR++I ++ +   R       +P SL  + + + P++ 
Sbjct: 315 GIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHL-RLEDSVQELPASLQDHHLAIVPDSD 373

Query: 399 PLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKHVEKALHKEVKERFGLL 220
              VS TG F+ P+SC   +L+ +I  +LD A+   + Y  +  VE+ L ++ +E  GL 
Sbjct: 374 IPKVSQTGLFLAPASCSGPDLVEFICRNLDVASGRFSRYRRDIQVERQLWRQCQEELGLQ 433

Query: 219 ELHKDDSITPGLMISCCQRLLTRTDKLNANLRGNILYVTHYYSVLTEGILCIPWNF 52
            L KDDS+TP  M+   + LL    K   + RG  L++T+Y+SV T+GI+CIPW+F
Sbjct: 434 RLSKDDSVTPDKMVMAIRHLLQSGVK---SCRGLSLHITNYWSVPTDGIVCIPWDF 486


>AL133503-2|CAB63508.1|  491|Drosophila melanogaster EG:BACH48C10.2
           protein.
          Length = 491

 Score =  156 bits (379), Expect = 3e-38
 Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 1/236 (0%)
 Frame = -2

Query: 756 LQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKVRQEDSALTMIPSYEKALSSILR 577
           L+ R +    +TG+SL+GDV L   D  + WL+ + ++R  +  L ++P YEKALS++L 
Sbjct: 255 LRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLRLVPLYEKALSAVLL 314

Query: 576 DIHIRRRKFM-PKVSAALYCSHLRQLITSIGDFYGRGNKFPPSVPESLSKYEIVVEPEAG 400
            I I RR+   P   A  Y   LR++I ++ +   R       +P SL  + + + P++ 
Sbjct: 315 GIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHL-RLEDSVQELPASLQDHHLAIVPDSD 373

Query: 399 PLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKHVEKALHKEVKERFGLL 220
              VS TG F+ P+SC   +L+ +I  +LD A+   + Y  +  VE+ L ++ +E  GL 
Sbjct: 374 IPKVSQTGLFLAPASCSGPDLVEFICRNLDVASGRFSRYRRDIQVERQLWRQCQEELGLQ 433

Query: 219 ELHKDDSITPGLMISCCQRLLTRTDKLNANLRGNILYVTHYYSVLTEGILCIPWNF 52
            L KDDS+TP  M+   + LL    K   + RG  L++T+Y+SV T+GI+CIPW+F
Sbjct: 434 RLSKDDSVTPDKMVMAIRHLLQSGVK---SCRGLSLHITNYWSVPTDGIVCIPWDF 486


>AE014298-384|AAF45772.2|  491|Drosophila melanogaster CG2854-PA
           protein.
          Length = 491

 Score =  156 bits (379), Expect = 3e-38
 Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 1/236 (0%)
 Frame = -2

Query: 756 LQGRTIALGQFTGVSLDGDVYLNIIDVRNEWLSLIKKVRQEDSALTMIPSYEKALSSILR 577
           L+ R +    +TG+SL+GDV L   D  + WL+ + ++R  +  L ++P YEKALS++L 
Sbjct: 255 LRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLRLVPLYEKALSAVLL 314

Query: 576 DIHIRRRKFM-PKVSAALYCSHLRQLITSIGDFYGRGNKFPPSVPESLSKYEIVVEPEAG 400
            I I RR+   P   A  Y   LR++I ++ +   R       +P SL  + + + P++ 
Sbjct: 315 GIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHL-RLEDSVQELPASLQDHHLAIVPDSD 373

Query: 399 PLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSINKHVEKALHKEVKERFGLL 220
              VS TG F+ P+SC   +L+ +I  +LD A+   + Y  +  VE+ L ++ +E  GL 
Sbjct: 374 IPKVSQTGLFLAPASCSGPDLVEFICRNLDVASGRFSRYRRDIQVERQLWRQCQEELGLQ 433

Query: 219 ELHKDDSITPGLMISCCQRLLTRTDKLNANLRGNILYVTHYYSVLTEGILCIPWNF 52
            L KDDS+TP  M+   + LL    K   + RG  L++T+Y+SV T+GI+CIPW+F
Sbjct: 434 RLSKDDSVTPDKMVMAIRHLLQSGVK---SCRGLSLHITNYWSVPTDGIVCIPWDF 486


>AY069653-1|AAL39798.1|  713|Drosophila melanogaster LD42374p
           protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -2

Query: 774 SNIMDNLQGRTIALGQFTGVSLDGDVYLNIID-VRNEWLSLIKKVRQEDSALTMIPSYEK 598
           SN++DN  GR +  G+ +   L   + + +I  V  EWL  +  +  + + +T I  Y +
Sbjct: 238 SNVVDNETGRPLGGGKISHFILHNQISIGLIGLVEREWLETLPTI--DPNEVTYI-DYVE 294

Query: 597 ALSSILRDI 571
           A + + R++
Sbjct: 295 AGNKLAREL 303


>AE013599-1154|AAF58768.1|  713|Drosophila melanogaster CG11883-PB,
           isoform B protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -2

Query: 774 SNIMDNLQGRTIALGQFTGVSLDGDVYLNIID-VRNEWLSLIKKVRQEDSALTMIPSYEK 598
           SN++DN  GR +  G+ +   L   + + +I  V  EWL  +  +  + + +T I  Y +
Sbjct: 238 SNVVDNETGRPLGGGKISHFILHNQISIGLIGLVEREWLETLPTI--DPNEVTYI-DYVE 294

Query: 597 ALSSILRDI 571
           A + + R++
Sbjct: 295 AGNKLAREL 303


>AE013599-1153|AAF58767.1|  732|Drosophila melanogaster CG11883-PA,
           isoform A protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -2

Query: 774 SNIMDNLQGRTIALGQFTGVSLDGDVYLNIID-VRNEWLSLIKKVRQEDSALTMIPSYEK 598
           SN++DN  GR +  G+ +   L   + + +I  V  EWL  +  +  + + +T I  Y +
Sbjct: 238 SNVVDNETGRPLGGGKISHFILHNQISIGLIGLVEREWLETLPTI--DPNEVTYI-DYVE 294

Query: 597 ALSSILRDI 571
           A + + R++
Sbjct: 295 AGNKLAREL 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,549,743
Number of Sequences: 53049
Number of extensions: 664028
Number of successful extensions: 1584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)