Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e11
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    28   6.9  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical
           protein T27F6.1 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = -2

Query: 345 DELIAYINNHLDEATLLLTEYS-INKHVEKALHKEVKERFGL-LELHKDDSITPGLMISC 172
           D ++  + N +  A ++  +Y  I KHVE + H +    F +  +  K+       M SC
Sbjct: 115 DHVLRPLENGVAFARVVYMDYELIEKHVEMSYHPQNSFCFAIDKKAAKEFKERMQAMASC 174

Query: 171 CQRLLTRTDKLNANLRGNILYVTHY 97
              +L   D L+ +  G+   + HY
Sbjct: 175 LPNVLLLPDDLSVDSHGHNTNLAHY 199


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = -2

Query: 702 DVYL----NIIDVRNEWLSLIKKVRQEDSALTMIPSYEKALSSILRDIH 568
           D+YL    +II+++++W  +       D +L + P ++ + S++LRDI+
Sbjct: 73  DLYLKAVNSIINMKDQWRKVKTFAETLDLSLDLYPCFDISRSTVLRDIN 121


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = -2

Query: 654 IKKVRQEDSALTMIP---SYEKALSSILRDIHIRRRKFMPKVSAALYCSHLRQLITSIGD 484
           +K V Q+   L   P   S    +++  R++ I RR    K++A    + L+QL  S   
Sbjct: 618 LKSVAQDSKQLPDGPVLLSPTSIITAFRREV-IERRPEEFKIAAL---TDLKQLFPSGNP 673

Query: 483 FY-GRGNKFPPSVPESLSKYEIVVEPEAGPLMVSPTGQ 373
           FY G GN+    V      YE V  P A  L++ P+G+
Sbjct: 674 FYAGFGNRITDVV-----SYEAVAVPAARILIIDPSGK 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,797
Number of Sequences: 27780
Number of extensions: 347759
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)