Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e11
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 644 TFFINDNHSFLTSIMLRYTSPSKLTPVN*PSAIVLPCKLSIILEC 778
           TFF ND +SFL  +    T  +KL  ++   ++    + +  L C
Sbjct: 121 TFFANDKNSFLHDV----TERNKLVRLSGDGSVTYGMRFTTTLAC 161


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = -2

Query: 453 SVPESLSKYEIVVEPEAGPLMVSPTGQFITPSSCPADELIAYINNHLDEATLLLTEYSIN 274
           ++P  LS   ++    A   ++S  G    P+  P D L+  +        L L+ YS+ 
Sbjct: 146 TLPLRLSFCVVLACSTATVYVMSVVGLSKAPAQIPVDVLVLTVTLSASAMVLGLSSYSLT 205

Query: 273 KHVEKALHKEVKE 235
           +  ++    E ++
Sbjct: 206 EFQQRRAFLETRQ 218


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 516 HLRQLITSIGDFYG 475
           H+ +L+T+IGD YG
Sbjct: 112 HIVRLVTAIGDAYG 125


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 204 RPCVVLVVQIFLLPLCVML 260
           RPC  L+V + +  LCV L
Sbjct: 74  RPCNYLLVSLAVSDLCVAL 92


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 489 GDFYGRGNKFPPSVPESLSKYEIVVEPEAGPLMVSP 382
           G F+ R +     + ESL  + I        +MVSP
Sbjct: 246 GKFFSRSSTSRIVISESLKHFTIQSSVTTSKMMVSP 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,301
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)