Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e09
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 273 1e-73
04_01_0103 + 1082077-1082167,1083037-1085477 270 6e-73
01_06_0662 + 30987187-30987277,30987825-30990214 244 7e-65
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 243 1e-64
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 193 1e-49
03_05_0511 + 25056018-25059107 109 2e-24
02_04_0148 - 20198407-20201424 102 3e-22
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 54 2e-07
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 50 2e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.011
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.019
01_04_0109 + 16112581-16112934 32 0.40
04_01_0330 - 4369326-4370852 30 2.2
09_06_0142 - 21107878-21109104 28 6.6
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 28 8.7
07_03_0698 - 20765305-20768526 28 8.7
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 273 bits (669), Expect = 1e-73
Identities = 123/177 (69%), Positives = 146/177 (82%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 547
QYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +
Sbjct: 655 QYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714
Query: 546 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 367
YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLP
Sbjct: 715 YASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLP 774
Query: 366 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 196
V ESFGF++ LR+ T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE
Sbjct: 775 VIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 270 bits (663), Expect = 6e-73
Identities = 122/177 (68%), Positives = 145/177 (81%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 547
QYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +
Sbjct: 655 QYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714
Query: 546 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 367
YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLP
Sbjct: 715 YASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLP 774
Query: 366 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 196
V ESFGF++ LR+ T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE
Sbjct: 775 VIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 244 bits (596), Expect = 7e-65
Identities = 113/163 (69%), Positives = 134/163 (82%), Gaps = 2/163 (1%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRR 553
QYLNEIKDSVVAGFQWA+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR
Sbjct: 651 QYLNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARR 710
Query: 552 CLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAY 373
+YA LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAY
Sbjct: 711 VIYAAQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAY 770
Query: 372 LPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSK 244
LPV ESFGFT+ LR+ T GQAFP VFDHW++L DP EP ++
Sbjct: 771 LPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 243 bits (594), Expect = 1e-64
Identities = 109/177 (61%), Positives = 136/177 (76%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 547
QYL+EIKDSVVAGFQWA+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +
Sbjct: 665 QYLSEIKDSVVAGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAM 724
Query: 546 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 367
YA LTA PRLMEP+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLP
Sbjct: 725 YAAQLTASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLP 784
Query: 366 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 196
V +SF FT LR+ T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+
Sbjct: 785 VAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 193 bits (470), Expect = 1e-49
Identities = 96/187 (51%), Positives = 122/187 (65%), Gaps = 12/187 (6%)
Frame = -2
Query: 720 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 541
LN +KDS+V GFQW A+EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+
Sbjct: 783 LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS 842
Query: 540 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 361
L A PRLMEPVY EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV
Sbjct: 843 AFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVI 902
Query: 360 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETR 217
ESFGF DLR +T GQAF VFDHW ++PGD P EP Q + +TR
Sbjct: 903 ESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTR 962
Query: 216 KRKGLKE 196
+RKG+ E
Sbjct: 963 RRKGMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 109 bits (263), Expect = 2e-24
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Frame = -2
Query: 711 IKDSVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIPTTR 556
+++ +V+GFQ A G + +E + G+ F + Y H+DA + GQ+I +
Sbjct: 815 LRNCIVSGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVITAVK 874
Query: 555 RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 376
++ +PRL+E +Y CE+ P +G Y VL+R+R V +E GT +F V A
Sbjct: 875 EACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHA 934
Query: 375 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 262
YLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 935 YLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 102 bits (244), Expect = 3e-22
Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Frame = -2
Query: 711 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQIIPTT 559
+K+S+ GFQ A G + E G+ F + L +D GQII
Sbjct: 790 VKNSIATGFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQIITAV 849
Query: 558 RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 379
R A +L ++PRL+EP+Y CE+ P +G +Y VL R V +E GT +F V
Sbjct: 850 REACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVH 909
Query: 378 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 262
AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 910 AYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 - 26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 53.6 bits (123), Expect = 2e-07
Identities = 43/148 (29%), Positives = 66/148 (44%)
Frame = -2
Query: 714 EIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 535
E V+ G + + GV+A + +R + D + H QI R L
Sbjct: 587 EYVPGVMKGIEESLPNGVLAGYPVVDLRAVLVDGSYHDVDSSVLAFQI--AARGAFREGL 644
Query: 534 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 355
A PRL+EP+ E+ PE +G + G LN RRG V G + +V A++P+ E
Sbjct: 645 RKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAEM 703
Query: 354 FGFTADLRSNTGGQAFPQCVFDHWQVLP 271
F + + LR T G+A + V+P
Sbjct: 704 FQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/130 (24%), Positives = 58/130 (44%)
Frame = -2
Query: 702 SVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 523
++ GF+ A G + + +R + D H A+ + C A+
Sbjct: 613 AIEKGFKEACNSGSLIGHPVENIRIVLTDGASH--AVDSSELAFKLASIYAFRQCYAAAR 670
Query: 522 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 343
P ++EPV E++ P G + G +N+R+G + Q +V ++P+N FG++
Sbjct: 671 PVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYS 728
Query: 342 ADLRSNTGGQ 313
LRS T G+
Sbjct: 729 TALRSMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -2
Query: 531 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 352
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 351 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 265
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 359 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 204
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 362 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 207
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 563 VGMIWPPPLWMASVWSVTS 619
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 238 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 357
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 613 YIIDVESNTTQILFSHNSFLSGPLESSHNRVLN 711
Y I++ I+ S+N L G LES H+R L+
Sbjct: 644 YAINIAHRRVDIMDSNNYNLIGTLESDHHRALS 676
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 645 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 484
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,675,700
Number of Sequences: 37544
Number of extensions: 472633
Number of successful extensions: 1274
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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