Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e09
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 336 1e-92
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 336 1e-92
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 181 4e-46
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 181 4e-46
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 77 1e-14
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.5
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 1.9
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.5
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 5.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 336 bits (825), Expect = 1e-92
Identities = 150/180 (83%), Positives = 165/180 (91%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 547
QYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR
Sbjct: 664 QYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVF 723
Query: 546 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 367
YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLP
Sbjct: 724 YASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLP 783
Query: 366 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 187
VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 784 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 336 bits (825), Expect = 1e-92
Identities = 150/180 (83%), Positives = 165/180 (91%)
Frame = -2
Query: 726 QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 547
QYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR
Sbjct: 664 QYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVF 723
Query: 546 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 367
YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLP
Sbjct: 724 YASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLP 783
Query: 366 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 187
VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 784 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 181 bits (441), Expect = 4e-46
Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 12/187 (6%)
Frame = -2
Query: 720 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 541
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 763 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 822
Query: 540 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 361
L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV
Sbjct: 823 AFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVM 882
Query: 360 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETR 217
+SFGF DLR +T GQAF F HWQ++PGDP + Q P+ + +TR
Sbjct: 883 DSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTR 942
Query: 216 KRKGLKE 196
+RKGL E
Sbjct: 943 RRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 181 bits (441), Expect = 4e-46
Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 12/187 (6%)
Frame = -2
Query: 720 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 541
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 638 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 697
Query: 540 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 361
L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV
Sbjct: 698 AFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVM 757
Query: 360 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETR 217
+SFGF DLR +T GQAF F HWQ++PGDP + Q P+ + +TR
Sbjct: 758 DSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTR 817
Query: 216 KRKGLKE 196
+RKGL E
Sbjct: 818 RRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 77.4 bits (182), Expect = 1e-14
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Frame = -2
Query: 702 SVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLT 529
++VAGF+ G + E + G+ + ++V AI GGQ++ + A
Sbjct: 693 ALVAGFELFCNTGPLCNEIMHGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKK 749
Query: 528 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 349
RL+ +Y C + A+G ++ VL++R+ V E T +F V + +PV ESF
Sbjct: 750 LALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFS 809
Query: 348 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 262
F LR T G A Q F HWQV+ DP
Sbjct: 810 FCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 426 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 262
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/126 (24%), Positives = 53/126 (42%)
Frame = -2
Query: 690 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 511
G EG + + + G+ I D + H A+ +I T + + A L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643
Query: 510 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 331
EP+ E P G + L +R + G I +A P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701
Query: 330 SNTGGQ 313
S T G+
Sbjct: 702 SLTEGK 707
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 582 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 421
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 420 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 316
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 38 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 157
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 713 KLRTLLWLDSSGPLRKELWLKRICVVLDST 624
K++TL+W PL KEL L+R+ V D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 713 KLRTLLWLDSSGPLRKELWLKRICVVLDST 624
K++TL+W PL KEL L+R+ V D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 271 REDLPMVEYALREGLSAGVGTQIGSKTERLID 366
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 582 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 436
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,194
Number of Sequences: 27780
Number of extensions: 392345
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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