Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e08
(766 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69907-1|CAA49532.1| 136|Homo sapiens P1 gene for c subunit of ... 87 9e-17
D13118-1|BAA02420.1| 136|Homo sapiens ATP synthase subunit c pr... 87 9e-17
CR533449-1|CAG38480.1| 136|Homo sapiens ATP5G1 protein. 87 9e-17
BT007230-1|AAP35894.1| 136|Homo sapiens ATP synthase, H+ transp... 87 9e-17
BC004963-1|AAH04963.1| 136|Homo sapiens ATP synthase, H+ transp... 87 9e-17
X69908-1|CAA49533.1| 141|Homo sapiens protein ( H.sapiens gene ... 86 1e-16
D13119-1|BAA02421.1| 141|Homo sapiens ATP synthase subunit c pr... 86 1e-16
BC020826-1|AAH20826.1| 141|Homo sapiens ATP5G2 protein protein. 86 1e-16
U09813-1|AAA78807.1| 142|Homo sapiens mitochondrial ATP synthas... 82 2e-15
M16453-1|AAA51806.1| 100|Homo sapiens ATP5A protein. 82 2e-15
CR407601-1|CAG28411.1| 142|Homo sapiens ATP5G3 protein. 82 2e-15
BC106881-1|AAI06882.1| 142|Homo sapiens ATP synthase, H+ transp... 82 2e-15
AC096649-1|AAX88970.1| 142|Homo sapiens unknown protein. 82 2e-15
M16439-1|AAA51804.1| 58|Homo sapiens ATP5A protein. 62 2e-09
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein. 34 0.64
AF522196-1|AAN45861.1| 870|Homo sapiens scavenger receptor type... 34 0.64
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ... 34 0.64
AB052951-1|BAC53753.1| 866|Homo sapiens SRECRP-1 protein. 34 0.64
AB024433-1|BAD93345.1| 866|Homo sapiens NSR1 protein. 34 0.64
AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein. 34 0.64
AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar t... 32 2.6
AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar t... 32 2.6
BC094778-1|AAH94778.1| 468|Homo sapiens midnolin protein. 31 6.0
>X69907-1|CAA49532.1| 136|Homo sapiens P1 gene for c subunit of
human mitochondrial ATP protein.
Length = 136
Score = 86.6 bits (205), Expect = 9e-17
Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Frame = -1
Query: 763 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXX 605
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKF
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 604 XXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 473
VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 119
>D13118-1|BAA02420.1| 136|Homo sapiens ATP synthase subunit c
precursor protein.
Length = 136
Score = 86.6 bits (205), Expect = 9e-17
Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Frame = -1
Query: 763 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXX 605
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKF
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 604 XXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 473
VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 119
>CR533449-1|CAG38480.1| 136|Homo sapiens ATP5G1 protein.
Length = 136
Score = 86.6 bits (205), Expect = 9e-17
Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Frame = -1
Query: 763 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXX 605
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKF
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 604 XXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 473
VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 119
>BT007230-1|AAP35894.1| 136|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit c
(subunit 9), protein.
Length = 136
Score = 86.6 bits (205), Expect = 9e-17
Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Frame = -1
Query: 763 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXX 605
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKF
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 604 XXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 473
VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 119
>BC004963-1|AAH04963.1| 136|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit C1
(subunit 9) protein.
Length = 136
Score = 86.6 bits (205), Expect = 9e-17
Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Frame = -1
Query: 763 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXX 605
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKF
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 604 XXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 473
VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 76 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 119
>X69908-1|CAA49533.1| 141|Homo sapiens protein ( H.sapiens gene for
mitochondrial ATP synthase c subunit (P2 form). ).
Length = 141
Score = 85.8 bits (203), Expect = 1e-16
Identities = 45/74 (60%), Positives = 52/74 (70%)
Frame = -1
Query: 694 TQLSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQ 515
T L + RSFQT+++++DID+AAKF VFGSLIIGYARNPSLKQ
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 110
Query: 514 QLFSYAILGFALSE 473
QLFSYAILGFALSE
Sbjct: 111 QLFSYAILGFALSE 124
>D13119-1|BAA02421.1| 141|Homo sapiens ATP synthase subunit c
precursor protein.
Length = 141
Score = 85.8 bits (203), Expect = 1e-16
Identities = 45/74 (60%), Positives = 52/74 (70%)
Frame = -1
Query: 694 TQLSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQ 515
T L + RSFQT+++++DID+AAKF VFGSLIIGYARNPSLKQ
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 110
Query: 514 QLFSYAILGFALSE 473
QLFSYAILGFALSE
Sbjct: 111 QLFSYAILGFALSE 124
>BC020826-1|AAH20826.1| 141|Homo sapiens ATP5G2 protein protein.
Length = 141
Score = 85.8 bits (203), Expect = 1e-16
Identities = 45/74 (60%), Positives = 52/74 (70%)
Frame = -1
Query: 694 TQLSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQ 515
T L + RSFQT+++++DID+AAKF VFGSLIIGYARNPSLKQ
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 110
Query: 514 QLFSYAILGFALSE 473
QLFSYAILGFALSE
Sbjct: 111 QLFSYAILGFALSE 124
>U09813-1|AAA78807.1| 142|Homo sapiens mitochondrial ATP synthase
subunit 9 precursor protein.
Length = 142
Score = 81.8 bits (193), Expect = 2e-15
Identities = 42/68 (61%), Positives = 48/68 (70%)
Frame = -1
Query: 676 RSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYA 497
R FQT+++++DID+AAKF VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117
Query: 496 ILGFALSE 473
ILGFALSE
Sbjct: 118 ILGFALSE 125
>M16453-1|AAA51806.1| 100|Homo sapiens ATP5A protein.
Length = 100
Score = 81.8 bits (193), Expect = 2e-15
Identities = 46/75 (61%), Positives = 51/75 (68%)
Frame = -1
Query: 697 PTQLSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLK 518
P Q+ A R FQT+ V++DID+AAKF VFGSLIIGYARNPSLK
Sbjct: 10 PLQV-ARRGFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLK 68
Query: 517 QQLFSYAILGFALSE 473
QQLFSYAILGFALSE
Sbjct: 69 QQLFSYAILGFALSE 83
>CR407601-1|CAG28411.1| 142|Homo sapiens ATP5G3 protein.
Length = 142
Score = 81.8 bits (193), Expect = 2e-15
Identities = 42/68 (61%), Positives = 48/68 (70%)
Frame = -1
Query: 676 RSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYA 497
R FQT+++++DID+AAKF VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117
Query: 496 ILGFALSE 473
ILGFALSE
Sbjct: 118 ILGFALSE 125
>BC106881-1|AAI06882.1| 142|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit C3
(subunit 9) protein.
Length = 142
Score = 81.8 bits (193), Expect = 2e-15
Identities = 42/68 (61%), Positives = 48/68 (70%)
Frame = -1
Query: 676 RSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYA 497
R FQT+++++DID+AAKF VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117
Query: 496 ILGFALSE 473
ILGFALSE
Sbjct: 118 ILGFALSE 125
>AC096649-1|AAX88970.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 81.8 bits (193), Expect = 2e-15
Identities = 42/68 (61%), Positives = 48/68 (70%)
Frame = -1
Query: 676 RSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFSYA 497
R FQT+++++DID+AAKF VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117
Query: 496 ILGFALSE 473
ILGFALSE
Sbjct: 118 ILGFALSE 125
>M16439-1|AAA51804.1| 58|Homo sapiens ATP5A protein.
Length = 58
Score = 62.5 bits (145), Expect = 2e-09
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = -1
Query: 562 FGSLIIGYARNPSLKQQLFSYAILGFALSE 473
FGSLIIGYARNPSLKQQLFSYAI+GFALSE
Sbjct: 12 FGSLIIGYARNPSLKQQLFSYAIVGFALSE 41
>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
Length = 4186
Score = 33.9 bits (74), Expect = 0.64
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 533 PGIADDEG---AEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEG 673
PG+A+ G A DC S++ CRC+ T FG ++ S R LEG
Sbjct: 2556 PGLAEQHGVWTARDCELVHRNGSHARCRCSRTGTFGVLMDA-SPRERLEG 2604
>AF522196-1|AAN45861.1| 870|Homo sapiens scavenger receptor type F
protein.
Length = 870
Score = 33.9 bits (74), Expect = 0.64
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +2
Query: 521 EGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRD 700
+G GIA EG CS CRC FG+ + R GP C+ELC
Sbjct: 71 QGDECGIAVCEGNSTCSENEVCVRPGECRCRH-GYFGANCDTKCPR-QFWGPDCKELCSC 128
Query: 701 SRYHLC--MGGYC-C---KWSHQCRVA 763
+ C + G C C +W +C A
Sbjct: 129 HPHGQCEDVTGQCTCHARRWGARCEHA 155
>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
protein.
Length = 3312
Score = 33.9 bits (74), Expect = 0.64
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 533 PGIADDEG---AEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEG 673
PG+A+ G A DC S++ CRC+ T FG ++ S R LEG
Sbjct: 2486 PGLAEQHGVWTARDCELVHRNGSHARCRCSRTGTFGVLMDA-SPRERLEG 2534
>AB052951-1|BAC53753.1| 866|Homo sapiens SRECRP-1 protein.
Length = 866
Score = 33.9 bits (74), Expect = 0.64
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +2
Query: 521 EGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRD 700
+G GIA EG CS CRC FG+ + R GP C+ELC
Sbjct: 71 QGDECGIAVCEGNSTCSENEVCVRPGECRCRH-GYFGANCDTKCPR-QFWGPDCKELCSC 128
Query: 701 SRYHLC--MGGYC-C---KWSHQCRVA 763
+ C + G C C +W +C A
Sbjct: 129 HPHGQCEDVTGQCTCHARRWGARCEHA 155
>AB024433-1|BAD93345.1| 866|Homo sapiens NSR1 protein.
Length = 866
Score = 33.9 bits (74), Expect = 0.64
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +2
Query: 521 EGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRD 700
+G GIA EG CS CRC FG+ + R GP C+ELC
Sbjct: 71 QGDECGIAVCEGNSTCSENEVCVRPGECRCRH-GYFGANCDTKCPR-QFWGPDCKELCSC 128
Query: 701 SRYHLC--MGGYC-C---KWSHQCRVA 763
+ C + G C C +W +C A
Sbjct: 129 HPHGQCEDVTGQCTCHARRWGARCEHA 155
>AB011536-1|BAA32464.1| 1364|Homo sapiens MEGF2 protein.
Length = 1364
Score = 33.9 bits (74), Expect = 0.64
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 533 PGIADDEG---AEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEG 673
PG+A+ G A DC S++ CRC+ T FG ++ S R LEG
Sbjct: 538 PGLAEQHGVWTARDCELVHRNGSHARCRCSRTGTFGVLMDA-SPRERLEG 586
>AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 31.9 bits (69), Expect = 2.6
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 530 VPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 706
VPG D+ + +C+ G C C + + + V S GL+ P+C + C
Sbjct: 123 VPGWRGDDCSSECAPGMWGPQCDKPCSCGNNSSCDPKSGVCSCPSGLQPPNCLQPCTPGY 182
Query: 707 YHLCMGGYCCKWSHQCRVA 763
Y G C++ QC A
Sbjct: 183 Y-----GPACQFRCQCHGA 196
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Frame = +2
Query: 530 VPGIADDEGAEDCSNTSSGTS-YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 706
+PG A E C + G HC C + + G GPHC LC
Sbjct: 383 LPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGVCQATSGLCQCAPGYTGPHCASLCPPDT 442
Query: 707 YHL-CMGGYCCKWSHQC 754
Y + C C+ + C
Sbjct: 443 YGVNCSARCSCENAIAC 459
>AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 31.9 bits (69), Expect = 2.6
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 530 VPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 706
VPG D+ + +C+ G C C + + + V S GL+ P+C + C
Sbjct: 123 VPGWRGDDCSSECAPGMWGPQCDKPCSCGNNSSCDPKSGVCSCPSGLQPPNCLQPCTPGY 182
Query: 707 YHLCMGGYCCKWSHQCRVA 763
Y G C++ QC A
Sbjct: 183 Y-----GPACQFRCQCHGA 196
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Frame = +2
Query: 530 VPGIADDEGAEDCSNTSSGTS-YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 706
+PG A E C + G HC C + + G GPHC LC
Sbjct: 383 LPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGVCQATSGLCQCAPGYTGPHCASLCPPDT 442
Query: 707 YHL-CMGGYCCKWSHQC 754
Y + C C+ + C
Sbjct: 443 YGVNCSARCSCENAIAC 459
>BC094778-1|AAH94778.1| 468|Homo sapiens midnolin protein.
Length = 468
Score = 30.7 bits (66), Expect = 6.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 699 SLHSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMP 535
+LH + Q RP R + T+ + N L+ R ++ + P L + A S A P
Sbjct: 287 TLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLAQLRCHAQCSPASP 341
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,465,388
Number of Sequences: 237096
Number of extensions: 2406606
Number of successful extensions: 6607
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6588
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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