Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e07
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 127 1e-30
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 120 2e-28
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 97 2e-21
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 89 6e-19
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 89 8e-19
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 69 7e-13
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.31
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.41
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 29 0.54
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.54
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.54
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.72
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 2.9
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.9
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.9
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.8
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 5.0
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 5.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.8
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 127 bits (307), Expect = 1e-30
Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 5/206 (2%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGFPLAAVV 577
LK ++ ++ G L + DE QTG GRTG F FE HG+ PDI+T++K +G G LAAV+
Sbjct: 234 LKALKKKCEERGMLLIIDEAQTGIGRTGSMF-SFEHHGIVPDILTLSKSLGAGTALAAVI 292
Query: 576 TTKEI--AANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDL 403
T++EI ++ T +P+ + +G VL+V++ + L + +K+ GE L+ L
Sbjct: 293 TSEEIEKVCYDNGFVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRL 352
Query: 402 QKQHPVIGDVRGQGLMIGVEL---VEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNN 232
+ +HP+I DVRG GL+ G+E+ +P + + + D + N ++ G
Sbjct: 353 KDKHPLIVDVRGLGLLQGIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHLRG-IGG 411
Query: 231 VFRIKPPMCITKQDVDFGISIINDAI 154
VFRI PP+ +T +++ I I + A+
Sbjct: 412 VFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 120 bits (290), Expect = 2e-28
Identities = 73/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNG-FPLAAV 580
L++A +L K + L++ADEVQTG RTG E VKPD+V + K I G +P++AV
Sbjct: 229 LEEAYKLCKAHNVLFIADEVQTGVARTGKMLC-IEHSNVKPDVVILGKAISGGVYPVSAV 287
Query: 579 VTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQ 400
++++EI N + +T+GGNP+ + V A LEV++EE L + + V+GE F L++ +
Sbjct: 288 LSSREIMLNFEPGTHGSTYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKFRTALIECK 347
Query: 399 KQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRI 220
P++ VRG+GL+ V + E +KT T+ D+ ++ GVL N+ R
Sbjct: 348 S--PIVQKVRGRGLLNAVVIDE--SKTNGRTAW--DLCLIMRSRGVLAK--PTHGNIIRF 399
Query: 219 KPPMCITKQDVDFGISIINDAI 154
PP+ IT++D+ GI +I ++
Sbjct: 400 SPPLVITEEDLMKGIEVIKKSL 421
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 97.1 bits (231), Expect = 2e-21
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNG-FPLAAV 580
L KA+EL K V DE+QTG GRTG FW E + PD + AKG G P A
Sbjct: 259 LAKARELCTKYDTYLVLDEIQTGCGRTG-KFWACEYENIIPDCIAFAKGFSGGLIPFAGY 317
Query: 579 VTTKEI---AANHAKAAYFN--TFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQ 415
+ T+E+ A N + A+ + T+ N + G A ++ I + L + +G +
Sbjct: 318 IATEELWNAAYNSLETAFLHTATYQENTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDR 377
Query: 414 LMDLQKQHP-VIGDVRGQGLMIGVEL--VEPGTKTPLTTSKVNDIHENIKDN-GVLIARG 247
L LQ + P V+ DVRG+G+++G+E + + I ++ D V +
Sbjct: 378 LNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEEFGEYYATPIVNDLADTYHVQVYCS 437
Query: 246 GRFNNVFRIKPPMCITKQDVDFGISIINDAIKK 148
+VFR PP+ I + D+D G+S + A+ K
Sbjct: 438 LNNPSVFRFLPPLTIPEADLDEGLSAVESAVAK 470
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 89.0 bits (211), Expect = 6e-19
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Frame = -1
Query: 753 KKAQELIKKNGGLYVADEVQTGFGRTGD-HFWGFETHGVKPDIVTMAKGIGNGF-PLAAV 580
K +++ K G ++ DEV +G GRTG H W E GV PDI ++AK +G G+ P++
Sbjct: 240 KAMRKVCDKYGVIFYLDEVMSGIGRTGTMHAW--EQEGVTPDIQSIAKCLGGGYQPISGA 297
Query: 579 VTTKEIA----ANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQL 412
+ I A A F T+ +P+A + AV ++ + L + + +G+Y +L
Sbjct: 298 LVGHRIMNVFEQKDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKL 357
Query: 411 MDLQKQHPVIGDVRGQGLMIGVELV-EPGTKTPLTTS-KVNDIHENIK-DNGVLIARG-- 247
+ HP +G++RG+GL G+E+V + TK KV + I ++GV + G
Sbjct: 358 HETFDSHPNVGNIRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMG 417
Query: 246 ---GRFNNVFRIKPPMCITKQDVDFGISIINDAIKKVV 142
G + + PP IT++ +D + ++ I V
Sbjct: 418 TIDGTRGDHVLLAPPYIITREQIDELVEALSKTITSTV 455
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 88.6 bits (210), Expect = 8e-19
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 3/196 (1%)
Frame = -1
Query: 729 KNGGLYVADEVQTGFGRTGDHFWGFET--HGVKPDIVTMAKGIGNGFPLAAVVTTKEIAA 556
K G + DE+Q G GR+GD W PDI+T+AK + NG P+ A + + +IAA
Sbjct: 255 KVGASLIYDEIQCGLGRSGD-LWAHSIVKDVASPDIITVAKPLANGLPIGATIVSSKIAA 313
Query: 555 NHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIG 379
+ +TFGGNP+A VG + + + QN + + + D ++P +I
Sbjct: 314 EIHPGEHGSTFGGNPVACRVGTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIR 373
Query: 378 DVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCIT 199
G+GL++G++ EP K E + G+L+ GG NN R+ P + +
Sbjct: 374 GYAGRGLLLGLQFTEPPAK----------FIELARQQGLLLLPGG--NNNTRVLPSLNVK 421
Query: 198 KQDVDFGISIINDAIK 151
+ + G+ I+ +K
Sbjct: 422 DEVIAKGLDIMESTLK 437
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 68.9 bits (161), Expect = 7e-13
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = -1
Query: 750 KAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVK--PDIVTMAKGIGNGFPLAAVV 577
K Q +KK+ ++ DEVQTG G TG W E + PD+VT +K AA +
Sbjct: 287 KLQATLKKHDVKFIVDEVQTGVGSTGT-LWAHEQWNLPYPPDMVTFSKKFQ-----AAGI 340
Query: 576 TTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQK 397
++A +FNT+ G+P + + +L+ I+++ L N K VG++ L +L +
Sbjct: 341 FYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELAR 400
Query: 396 QHP-VIGDVRGQG 361
+HP I ++RG+G
Sbjct: 401 KHPGKINNLRGKG 413
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 206 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 379
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 380 PITGC 394
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 203 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 379
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 380 P 382
P
Sbjct: 252 P 252
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 732 KKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGFPLAA 583
+KN +++ DEV T G + + +KPD+ T+ K +G G P A
Sbjct: 234 EKNDIVFILDEVMTSRLSPGGLQ---QIYCLKPDLTTLGKYLGGGLPFGA 280
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.54
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 148 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 312
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 313 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLTV 450
+R L S +D++ + + N +++ + ++ + +Y TV
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTV 804
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.54
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +1
Query: 256 DEHSVVFDIL-MDIIN------FGSGQR--CLSSGFNKLHSDHEALSPDIANHWVLLLK- 405
DEHS+ D++ +DI + FG G C G N L S N+ ++LL
Sbjct: 347 DEHSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDH 406
Query: 406 --IHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIG 558
+P E+ DY + L FN F + VS E+ + + + G
Sbjct: 407 GLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDENFPIFATAITG 459
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 244 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 402
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 299 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 120
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 119 LARLKVFIFV 90
+ + V
Sbjct: 288 AISFSICVIV 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1
Query: 600 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 463
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 299 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 120
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 119 LARLKVFIFV 90
+ + V
Sbjct: 288 AISFSICVIV 297
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 60 YSNNLKQCILYKNKNFQTGKDFYYTL 137
Y NL Q ++ K F +GK+ Y+TL
Sbjct: 352 YGVNLNQSVILKAIGFSSGKNEYHTL 377
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 244 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 417
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 184 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 297
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 317 GVLVPGSTSSTPIM-----RPCPLTSPITGCCF*RSINCLMKYSPTTLLFCCSPSSSI 475
G+L+ GST ++ I+ +P L +TG R I C+ + T + + C SSI
Sbjct: 145 GLLLSGSTDASLIVWDVSSQPSRLLYKLTGHS--RGIECITRQPNTDIFWTCGSESSI 200
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +3
Query: 51 FPKYSNNLK---QCILY-KNKNFQTGKD 122
F S NL Q +LY KN+NFQTG +
Sbjct: 493 FDSLSRNLSLTVQTVLYLKNRNFQTGNE 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,232
Number of Sequences: 5004
Number of extensions: 65159
Number of successful extensions: 229
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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