Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e07
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 263 1e-70
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 160 1e-39
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 107 1e-23
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 107 1e-23
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 31 0.88
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL023834-2|CAA19479.2| 217|Caenorhabditis elegans Hypothetical ... 30 1.5
Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical p... 29 4.7
Z75711-9|CAK55175.1| 331|Caenorhabditis elegans Hypothetical pr... 29 4.7
DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein. 29 4.7
Z49911-5|CAA90128.1| 431|Caenorhabditis elegans Hypothetical pr... 28 8.2
U41556-3|AAM51519.1| 378|Caenorhabditis elegans Cysteine protea... 28 8.2
U41556-2|ABS19475.1| 369|Caenorhabditis elegans Cysteine protea... 28 8.2
U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protea... 28 8.2
L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-lik... 28 8.2
L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-lik... 28 8.2
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 263 bits (644), Expect = 1e-70
Identities = 128/203 (63%), Positives = 156/203 (76%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGFPLAAVV 577
LKK+ E ++K GGL +ADEVQTGFGR G HFWGFE+ PD+VTMAKGIGNGFPL AVV
Sbjct: 243 LKKSYESVQKRGGLAIADEVQTGFGRLGSHFWGFESQDALPDMVTMAKGIGNGFPLGAVV 302
Query: 576 TTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQK 397
T+KEIA + K+ YFNT+GGNP+AS VGKAVLEVIEEE LQ+NS VVG+YF++QL +
Sbjct: 303 TSKEIADSFNKSLYFNTYGGNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAI-- 360
Query: 396 QHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIK 217
IGDVRG+GLMIGVEL++ K PL +K I E+ K+ G+LI +GG NV RIK
Sbjct: 361 DDATIGDVRGKGLMIGVELIDEQGK-PLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIK 419
Query: 216 PPMCITKQDVDFGISIINDAIKK 148
PPMCITK+DVDF + II +IK+
Sbjct: 420 PPMCITKKDVDFAVDIIAKSIKQ 442
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 160 bits (388), Expect = 1e-39
Identities = 80/187 (42%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
Frame = -1
Query: 735 IKKNGGLYVADEVQTGFGRTGDHFWGFETH--GVKPDIVTMAKGIGNGFPLAAVVTTKEI 562
++ +GGL + DEVQTGFGR G +W + + G PDIVTM K +GNGFP++AV T KEI
Sbjct: 265 VRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVATRKEI 324
Query: 561 A-ANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPV 385
A A + YFNT+GGNP+A +V++V+++E L ++S+ +GE L DLQK+H
Sbjct: 325 ADALGGEVGYFNTYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKHEC 384
Query: 384 IGDVRGQGLMIGVELV-EPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPM 208
IGD+RG GL G++LV + T+ P + I K G+L+ G N+ +IKPP+
Sbjct: 385 IGDIRGVGLFWGIDLVKDRNTREPDQKLAIATILALRKSYGILLNADGPHTNILKIKPPL 444
Query: 207 CITKQDV 187
C + ++
Sbjct: 445 CFNENNI 451
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 107 bits (256), Expect = 1e-23
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 1/198 (0%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGF-PLAAV 580
LK +L KK L++ DEVQ+G GR+G + + V+PDIV + K + GF P++AV
Sbjct: 227 LKGVSDLCKKYNVLFITDEVQSGLGRSGKLLAHYHDN-VRPDIVVLGKALSGGFYPVSAV 285
Query: 579 VTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQ 400
+ + N + +T+GGNP+A V A LE+++EE L +NS V+G+ + +L L
Sbjct: 286 LCDDNVMMNIKPGEHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLP 345
Query: 399 KQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRI 220
K ++ VRG+GL + + + + +K+NG+L ++ R
Sbjct: 346 KD--IVSTVRGKGLFCAIVINKKYDAWKVCL--------KLKENGLLAK--NTHGDIIRF 393
Query: 219 KPPMCITKQDVDFGISII 166
PP+CI K+ V+ II
Sbjct: 394 APPLCINKEQVEQAADII 411
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 107 bits (256), Expect = 1e-23
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 1/198 (0%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGF-PLAAV 580
LK +L KK L++ DEVQ+G GR+G + + V+PDIV + K + GF P++AV
Sbjct: 162 LKGVSDLCKKYNVLFITDEVQSGLGRSGKLLAHYHDN-VRPDIVVLGKALSGGFYPVSAV 220
Query: 579 VTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQ 400
+ + N + +T+GGNP+A V A LE+++EE L +NS V+G+ + +L L
Sbjct: 221 LCDDNVMMNIKPGEHGSTYGGNPLACKVAIAALEILQEEKLVENSAVMGDLLMSKLKTLP 280
Query: 399 KQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRI 220
K ++ VRG+GL + + + + +K+NG+L ++ R
Sbjct: 281 KD--IVSTVRGKGLFCAIVINKKYDAWKVCL--------KLKENGLLAK--NTHGDIIRF 328
Query: 219 KPPMCITKQDVDFGISII 166
PP+CI K+ V+ II
Sbjct: 329 APPLCINKEQVEQAADII 346
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 62.9 bits (146), Expect = 2e-10
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%)
Frame = -1
Query: 744 QELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVK--PDIVTMAKGIGNGFPLAAVVTT 571
+++ K+G +++ DEVQTG G TGD W + + PD+VT +K + G
Sbjct: 297 RDITSKHGIVFIVDEVQTGGGATGD-IWAHDHWNLSSPPDMVTFSKKLLTG----GYFYG 351
Query: 570 KEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQ-KQ 394
+ + A Y NT+ G+P + + +EVI+ +GL + S+ VG F ++L +LQ
Sbjct: 352 EHLRVKEAYRIY-NTWMGDPTKLLLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASS 410
Query: 393 HPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKP 214
+ RG+G V+ + ++ NG + GG + R +P
Sbjct: 411 GGKLDQARGRGTFAAVDFPSGSLRDKFVDLAIS--------NG--LHCGGCGDRSLRFRP 460
Query: 213 PMCITKQDVDFGISIINDAIK 151
+ TK+ +D +++ +K
Sbjct: 461 SLVYTKKHLDLTFDLLDKTLK 481
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 136 LVDNFFDRIIDDRNAEVDVL-FSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 312
L+D+F D I+ N+ DVL F+ + ++ I +T D SV+ D+++ + F
Sbjct: 261 LIDSFVD-IMLLHNSHFDVLLFTSPSFNAHTVQYIPFATDPDI-SVMKDVVVSL--FSCI 316
Query: 313 QRCLSSGFNKLHSDHEALSPDIANHWV 393
R +++GF SD E LS D + W+
Sbjct: 317 NRTVTAGFANGISDIEKLSSDSKDRWI 343
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 584 AARGNPLPIPLAIVTMSGFTPCVSKPQK*SPVRPKPVCTSSATYKPPFFLINS 742
A NP P+P A S F P ++ + +P +P +SA +PP NS
Sbjct: 230 APEANPAPVPTA-TKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNS 281
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 584 AARGNPLPIPLAIVTMSGFTPCVSKPQK*SPVRPKPVCTSSATYKPPFFLINS 742
A NP P+P A S F P ++ + +P +P +SA +PP NS
Sbjct: 230 APEANPAPVPTA-TKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNS 281
>Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical
protein B0379.4b protein.
Length = 491
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 605 PIPLAIVTMSGFTPCVSKPQK*SPVRPKPVCTSSATYKPP 724
P P+ T++GFTP S PQ P P T + PP
Sbjct: 87 PNPVGRSTINGFTPSTSSPQNGLRYPPFPQNTPESVMSPP 126
>AL023834-2|CAA19479.2| 217|Caenorhabditis elegans Hypothetical
protein Y32B12A.3 protein.
Length = 217
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 100 KTFKRARISITHLVDNFFDRIIDDRNAEVDVLFSDAHWRFYSEYIIKASTTSDEHSVVF 276
KTFK+ R ++N I D ++ D F DA YS+Y + T + V+F
Sbjct: 105 KTFKKIRAIEGPALENLDKLIADGQSGSFDFAFIDADKTNYSKYYDRCVTLLRKGGVIF 163
>Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical
protein K02B12.4b protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHG 643
L K E + K VA +GFG FW FE +G
Sbjct: 236 LPKRFESLYKKKRQQVATSDSSGFGSNASDFWSFERYG 273
>Z75711-9|CAK55175.1| 331|Caenorhabditis elegans Hypothetical
protein K02B12.4a protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHG 643
L K E + K VA +GFG FW FE +G
Sbjct: 167 LPKRFESLYKKKRQQVATSDSSGFGSNASDFWSFERYG 204
>DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 756 LKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHG 643
L K E + K VA +GFG FW FE +G
Sbjct: 236 LPKRFESLYKKKRQQVATSDSSGFGSNASDFWSFERYG 273
>Z49911-5|CAA90128.1| 431|Caenorhabditis elegans Hypothetical
protein M28.6 protein.
Length = 431
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 666 FW-GFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAK 544
+W GF THG + MA +G T+EIAA+H K
Sbjct: 129 YWPGFGTHGRDNVTINMALSHMSGMAWFDTPITEEIAADHEK 170
>U41556-3|AAM51519.1| 378|Caenorhabditis elegans Cysteine protease
related protein6, isoform b protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 672 DHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFG 520
D F+G +GVK D+ + K + PL E N+ Y +T G
Sbjct: 248 DKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGG 298
>U41556-2|ABS19475.1| 369|Caenorhabditis elegans Cysteine protease
related protein6, isoform c protein.
Length = 369
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 672 DHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFG 520
D F+G +GVK D+ + K + PL E N+ Y +T G
Sbjct: 239 DKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGG 289
>U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protease
related protein6, isoform a protein.
Length = 379
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 672 DHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFG 520
D F+G +GVK D+ + K + PL E N+ Y +T G
Sbjct: 249 DKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGG 299
>L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 672 DHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFG 520
D F+G +GVK D+ + K + PL E N+ Y +T G
Sbjct: 249 DKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGG 299
>L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 672 DHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFG 520
D F+G +GVK D+ + K + PL E N+ Y +T G
Sbjct: 249 DKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGG 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,918
Number of Sequences: 27780
Number of extensions: 374007
Number of successful extensions: 1231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -