Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e05
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   1.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    27   4.1  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    27   4.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 636 SDTTVPLLQR*VNPAAPKRTAAWYTSSCPKTSQVRPLQN 520
           ++T  P + + ++ A P R AA +  S PK + +RPL N
Sbjct: 487 TNTLEPSVLKQLHLANPNRQAASFNFSGPKRAPIRPLSN 525


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 483 MHPTCPMRAVPSTTTTSCQKQCEPHVQNLIFKSYIM----KLTTELTLFQATSDRI 328
           +HP      + S  T S QK+ +  ++NL+F S       K  T + L Q++S ++
Sbjct: 345 VHPVSTYYTMLSNFTLSLQKEIDERIRNLLFVSLSSGGDNKNDTGIPLIQSSSSKV 400


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 553 SEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPE 425
           +++L  P  PK S   PLH   VN ++   E   ++ N IVP+
Sbjct: 85  TDNLPEPILPKFSGKFPLHPNNVNVNS---EILEYYINEIVPK 124


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 417 EPHVQNLIFKSYIMKLTTELTLFQATSDRIYAL 319
           EP ++  +FKS+   +  E  ++ +  DR+ AL
Sbjct: 126 EPEIKTEVFKSFFNSMPKEFEVWMSHGDRLSAL 158


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 701 RSEDGNGYWPQVAVMAVFFLGRCSYI 778
           +  D  GYW +    + FF GRC+ +
Sbjct: 520 KDSDAVGYWIEAEDDSTFFPGRCAAV 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,425
Number of Sequences: 5004
Number of extensions: 55141
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)