Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e05
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1433 + 26513728-26514135,26525534-26526280                       28   7.6  
04_04_0684 - 27241306-27241665                                         28   10.0 

>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 600 NPAAPKRTAAWYTSSCPKTSQV 535
           +P AP     +Y+SSCPK  Q+
Sbjct: 85  SPPAPGLRVGYYSSSCPKAEQI 106


>04_04_0684 - 27241306-27241665
          Length = 119

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 412 WLTLLLARCCCGGRDCSHR 468
           WL +  + CC GG DC HR
Sbjct: 6   WLGVDSSGCCGGGCDCGHR 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,220,639
Number of Sequences: 37544
Number of extensions: 339859
Number of successful extensions: 900
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)