Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e05
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF067947-8|AAC19225.1| 343|Caenorhabditis elegans Kinetochore n... 28 6.8
Z81518-3|CAB04215.3| 315|Caenorhabditis elegans Hypothetical pr... 28 9.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.0
AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical ... 28 9.0
>Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 412
++ A ++ CP+ A PST T+SC C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509
>Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 412
++ A ++ CP+ A PST T+SC C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521
>Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 412
++ A ++ CP+ A PST T+SC C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509
>Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 412
++ A ++ CP+ A PST T+SC C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521
>AF067947-8|AAC19225.1| 343|Caenorhabditis elegans Kinetochore null
protein 3 protein.
Length = 343
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 564 TSSCPKTSQVRPLQN*ADMLHFTASLSMHPTCPMRAVPSTTTTSCQKQCEP 412
T CP+T V ++ D+ ++ P+ P RA P+ T C+K P
Sbjct: 80 TQGCPETFSVSEHEDDDDVEPMEVDGTIVPS-PQRATPTRGVTPCEKSTTP 129
>Z81518-3|CAB04215.3| 315|Caenorhabditis elegans Hypothetical
protein F28D9.2b protein.
Length = 315
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 36 INIFILDIIWFFLGR*NKNHILVFNFNIFKYIK*TYQ----LICIIYNN 170
IN +WF+ + +K + F +F Y K +++ L+C IY +
Sbjct: 30 INFLCFYFVWFYTPKESKFRYCLAYFQVFGYFKFSFELPSLLLCFIYRH 78
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 159 IYNNMYNLKLISNLTSICYLIIQKKSAR*FGRIVTRVYT 275
I N+Y+LK+ +L + YLI++ + I+TR T
Sbjct: 2973 INGNLYSLKINEDLFPVAYLIVENTNLTTSANILTRPET 3011
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 159 IYNNMYNLKLISNLTSICYLIIQKKSAR*FGRIVTRVYT 275
I N+Y+LK+ +L + YLI++ + I+TR T
Sbjct: 2973 INGNLYSLKINEDLFPVAYLIVENTNLTTSANILTRPET 3011
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 159 IYNNMYNLKLISNLTSICYLIIQKKSAR*FGRIVTRVYT 275
I N+Y+LK+ +L + YLI++ + I+TR T
Sbjct: 2973 INGNLYSLKINEDLFPVAYLIVENTNLTTSANILTRPET 3011
>AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical
protein Y46D2A.2 protein.
Length = 326
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -1
Query: 537 VRPLQN*ADMLHFTASLSMHPTCPMRAVPSTT-TTSCQKQCEPHVQNLIFKSYIMKLTTE 361
+ PLQ D +FTAS M T + V TT+ V + +F+ +++K +
Sbjct: 154 IEPLQIGLDYWYFTASEPMSMTMESKYVSDLVYTTTSVNTTGLVVNDFLFQEHVVKFQLD 213
Query: 360 LTLFQATSDRIYAL 319
LT + + A+
Sbjct: 214 LTRVRTIGTLVSAI 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,489
Number of Sequences: 27780
Number of extensions: 317096
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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