Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e04
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 239 4e-64
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 219 5e-58
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 107 1e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 103 3e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 89 9e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 78 2e-15
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 3e-15
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 76 7e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 74 3e-14
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 68 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 7e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 62 9e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 1e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 8e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 8e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 7e-08
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 52 9e-08
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 52 9e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 52 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 4e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 2e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 45 1e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 8e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 7e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.027
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.027
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.046
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 32 0.081
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.57
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 2.3
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 9.3
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 239 bits (584), Expect = 4e-64
Identities = 111/168 (66%), Positives = 134/168 (79%)
Frame = -2
Query: 786 EELTLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 607
+ELTL GIKQFY+A+E EEWKL+TLCDLY+T+++ QAVIFCNTRRKVDWLTE + RDFT
Sbjct: 225 DELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFT 284
Query: 606 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 427
VS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYDLP+NRENY
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 426 XXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 283
INFVT D R +++IE FY+T I EMP ++A+LI
Sbjct: 345 RIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 219 bits (534), Expect = 5e-58
Identities = 102/168 (60%), Positives = 127/168 (75%)
Frame = -2
Query: 786 EELTLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 607
+ELTL G+KQ++IA+E EEWK +TLCDLYDTL+I QAVIFCN+RRKVDWLTE M +FT
Sbjct: 227 DELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFT 286
Query: 606 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 427
V++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYDLP+NRENY
Sbjct: 287 VTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
Query: 426 XXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 283
INFVT D R L+DIE +Y T I EMP ++ +++
Sbjct: 347 RIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 107 bits (258), Expect = 1e-24
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Frame = -2
Query: 786 EELTLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 607
EEL++ GIKQ Y+ + EE K L +LY L+I Q++IFC + + + M T
Sbjct: 319 EELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT 378
Query: 606 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR----- 442
V+ + G+++ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NYD+P ++
Sbjct: 379 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 438
Query: 441 -ENYXXXXXXXXXXXXXXXXINFVTEADR-RALKDIEDFYHTSIVEMPSD 298
+ Y INFV + + I++++ I +P+D
Sbjct: 439 PQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 488
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 103 bits (247), Expect = 3e-23
Identities = 60/175 (34%), Positives = 90/175 (51%)
Frame = -2
Query: 786 EELTLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 607
+ELTL G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 606 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 427
H M Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Query: 426 XXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI*GAYIFP 262
I+F++ ADR L IE+ T I +P + + Y+FP
Sbjct: 368 RIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 88.6 bits (210), Expect = 9e-19
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Frame = -2
Query: 783 ELTLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTV 604
+LTL G++Q Y+ +E E+ K + DL D+L Q VIF + + + L + +F
Sbjct: 264 KLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPS 322
Query: 603 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 424
+HG + Q ER + F+ R+ + TD+ RGID+++V+ VINYD+P + ++Y
Sbjct: 323 ICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHR 382
Query: 423 XXXXXXXXXXXXXINF-VTEADRRALKDIEDFYHTSIVEMPSDV 295
I F +E D + L I++ + +I E+P ++
Sbjct: 383 VGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 77.8 bits (183), Expect = 2e-15
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = -2
Query: 777 TLXGIKQFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNTRRKVDWLTESMHLRDFTVS 601
T I Q + +E E K L D+ TL +IF T+R D LT+ + +F +
Sbjct: 400 TSENITQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 600 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
++HGD QRERE + FR+G + +++ T + +RG+D+ V+ VINYDLP++ ++Y
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDY 514
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/83 (39%), Positives = 53/83 (63%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 502
+ +IF T+R D +T + + A+HGD Q ER+ ++ +FRTG S +++ TD+ +
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 501 RGIDVQQVSCVINYDLPSNRENY 433
RGIDV+ ++ V NYD P N E+Y
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDY 453
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 75.8 bits (178), Expect = 7e-15
Identities = 39/146 (26%), Positives = 71/146 (48%)
Frame = -2
Query: 723 LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 544
LE L +LY+ + ++F + + D L + R +T +++HG DQ +R+ + ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 543 TGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEA 364
G VLI T ++ARG+DV+ + V+NYD P++ E+Y + F+T
Sbjct: 716 AGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPE 775
Query: 363 DRRALKDIEDFYHTSIVEMPSDVANL 286
+ DI S +P ++ L
Sbjct: 776 QEKYAVDIAKALKMSKQPVPKELQTL 801
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/123 (31%), Positives = 65/123 (52%)
Frame = -2
Query: 678 AVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 499
A+IF N R + + + L + V+ +H +M QRER + +FR ++++L+ TD+ +R
Sbjct: 261 AIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320
Query: 498 GIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTS 319
G+D+ V VIN+DLP + ++Y I+ VTE D + IED T
Sbjct: 321 GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTK 380
Query: 318 IVE 310
+ E
Sbjct: 381 LSE 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 67.7 bits (158), Expect = 2e-12
Identities = 42/132 (31%), Positives = 61/132 (46%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 502
+ VIF + L + + V +HG++ Q +RE + +FR G VLI TDLLA
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLA 349
Query: 501 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 322
RGID V VIN+D P + +Y + F T+ D +K I +
Sbjct: 350 RGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRS 409
Query: 321 SIVEMPSDVANL 286
S E+P+ V L
Sbjct: 410 SGCEVPNWVMAL 421
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.5 bits (145), Expect = 7e-11
Identities = 25/81 (30%), Positives = 48/81 (59%)
Frame = -2
Query: 675 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 496
+IF N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+ RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 495 IDVQQVSCVINYDLPSNRENY 433
ID+ VS V+NY++ + E+Y
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDY 600
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 62.1 bits (144), Expect = 9e-11
Identities = 33/127 (25%), Positives = 62/127 (48%)
Frame = -2
Query: 675 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 496
++F T+ V++++E + ++VS ++G +DQ R + FR G + +L+ TD+ +RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 495 IDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSI 316
ID+ ++ VINYD P + + + V D L D++ F + +
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPL 469
Query: 315 VEMPSDV 295
V V
Sbjct: 470 VTSSKQV 476
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/91 (30%), Positives = 48/91 (52%)
Frame = -2
Query: 705 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 526
L + L+ +IF T L + F+ +HG + Q R + +F++G+
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 525 LITTDLLARGIDVQQVSCVINYDLPSNRENY 433
L+ TD+ ARG+D+ V VINYD+P++ + Y
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/114 (26%), Positives = 50/114 (43%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 502
+ +IF ++ + L + +HG + Q +R + FR G L+ TD+ +
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 501 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDI 340
RGID++ + VINY+ P+ E Y I E DR+ LK +
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGV 619
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/115 (24%), Positives = 58/115 (50%)
Frame = -2
Query: 777 TLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSA 598
T+ G++Q Y+ ++ ++ L L L + ++F ++ V ++ E ++ D V
Sbjct: 307 TVEGLEQGYVVVDSDKRFLLLFSFLKRNLK-KKVIVFMSSCASVKYMAELLNYIDLPVLD 365
Query: 597 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
+HG Q+ R +F +L+ T++ ARG+D+ V ++ YD P + +Y
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 8e-09
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = -2
Query: 618 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 439
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 438 NY 433
+Y
Sbjct: 499 DY 500
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.4 bits (120), Expect = 7e-08
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Frame = -2
Query: 777 TLXGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSA 598
T + QFY+ + L E KL+ L T + ++F ++ ++V ++ E+ +S
Sbjct: 254 TPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISL 312
Query: 597 MH--GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
+H G Q R + +F + VL TD++ARG+D V VI D P + + Y
Sbjct: 313 LHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 520
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 519 TTDLLARGIDVQQVSCVINYDLPSNRENY 433
T GI+ V V++Y LP++ +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 520
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 519 TTDLLARGIDVQQVSCVINYDLPSNRENY 433
T GI+ V V++Y LP++ +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = -2
Query: 654 RKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVS 475
R ++ + ES++ + F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV
Sbjct: 449 RLLELIHESLN-QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQ 507
Query: 474 CVINYDLPSNRENY 433
VINYD P + +Y
Sbjct: 508 NVINYDPPLSVRSY 521
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = -2
Query: 681 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 502
+ ++F N + +T ++ +H +DQ++R + +F+ VL+ TD+ A
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 501 RGIDVQQVSCVINYDLPSNRENY 433
RGID+ V+ VI+Y +P + Y
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMY 473
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = -2
Query: 729 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESM--HLRDFTVSAMHGDMDQREREVIM 556
+K++ + L T+ +A++F ++ V++ + F + A+HG Q R
Sbjct: 242 YKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNF 301
Query: 555 RQFRTGSSR-VLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
+F+ + + VL TTD+ +RG+D+ V V+ D P + +++
Sbjct: 302 EKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 1e-05
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = -2
Query: 765 IKQFYIAIELEEW---KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESM--HLRDFTVS 601
+ QF I +L++ L L L + ++ ++F T VD++ + HL+
Sbjct: 263 VPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLK-IPCF 321
Query: 600 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
+H + +R I FR S +L TD++ARG+D ++ V+ PSN ++Y
Sbjct: 322 ILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = -2
Query: 606 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPSNREN 436
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 435 YXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 283
Y I F+ + + ++ +I+E P+ + L+
Sbjct: 530 YLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLL 580
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = -2
Query: 675 VIFCNTRRKVDWLTESMHLRDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLA 502
+I+C +R + + + D+ + A H +++ ER+ I ++++GS ++++ T
Sbjct: 746 IIYCLSRTSCEQVAAKLR-NDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFG 804
Query: 501 RGIDVQQVSCVINYDLPSNRENY 433
G+D V VI++ P + E Y
Sbjct: 805 MGVDKGDVRFVIHHSFPKSLEGY 827
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 7e-04
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = -2
Query: 507 LARGIDVQQVSCVINYDLPSNRENY 433
+ARG+D + V+CV+N+D+PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 600 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 466
A+ G+ + ERE +++ FR VL+ +L G D+ + C++
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 603 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 445
SA M+Q +++ + QFR G L+ T + G+D+ +I YD S+
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.046
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 585 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 457
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 32.3 bits (70), Expect = 0.081
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 585 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 454
M R ++ + +F+TG VLI T + GIDV + VI +++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 237 YCDI-YKKIYPLSL*NALWILLCGNNKSKFPLMITDFFSRS 118
Y DI K Y SL NAL I CG +++ + + + FFSR+
Sbjct: 343 YQDIDLKTPYDWSLANALKIKYCGLSEATYNVQLNSFFSRT 383
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 295 GQPHLRRLHFSDLYSVSCVLLRYL*EDLPTEPVKRT 188
G P L+ L F DL V L L +LPTEP K+T
Sbjct: 203 GDP-LKDLLFKDLRPVQTKELESLFAELPTEPPKQT 237
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 735 EEWKLETLCDLYDTLSIAQAVI--FCNTRRKVDW 640
+EWKL+ + D YD ++ QAV R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 562 HFTLTLIHVSMHSRYSKVTQMHRFSEPIHLATGVAENYSLCNRQCIIQVTQSFQ 723
HF L ++ S S K +H F+ +T + + +C R+C+I + QS+Q
Sbjct: 256 HFLLRIVSFSGDSSL-KSFSLHFFALQF-FSTSLIQYTHIC-RKCVITILQSYQ 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,530
Number of Sequences: 5004
Number of extensions: 61236
Number of successful extensions: 153
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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