Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e04
         (787 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    78   4e-16
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         38   3e-04
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    25   2.0  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    25   2.7  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   3.5  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             24   6.1  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   8.1  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 77.8 bits (183), Expect = 4e-16
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = -2

Query: 675 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 496
           ++F  T+R  D+L   M    F  +++HGD  QRERE+ +  F++G   VLI T + ARG
Sbjct: 427 LVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARG 486

Query: 495 IDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFV-TEADRRALKDI 340
           +D++ V+ V+NYDLP + ++Y                 +F   EADR    D+
Sbjct: 487 LDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEADRAMASDL 539


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 33/51 (64%)
 Frame = -2

Query: 585 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 433
           ++ R++E ++++FR     +LI T +L  GI++ + + VI ++ P+N  +Y
Sbjct: 595 IEHRKQEEVLKRFRMHECNLLIGTSVLEEGIELPKCNLVIRWNSPANYRSY 645


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 193 VSQAQWVDLLINIAIERRTQNINRKNVGALDEVGHI 300
           + + + +D+L NI +ER   +INR   G +  +GH+
Sbjct: 350 LDETRGIDVLGNI-LERSAISINRNLYGDVHNMGHV 384


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 650 RWIGSLNLCICVTLLYLLCMETWINVSVK*S*GSFVLALLVS*SPLI 510
           R IG   + ICV +++LLC    + +++  +  S ++  +V  S L+
Sbjct: 305 REIGLATMLICVVIVFLLCNLPAMMINIVEAFYSLIIEYMVKVSNLL 351


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 305 PVMWPTSSKAPT 270
           PV WP SS APT
Sbjct: 469 PVSWPVSSDAPT 480


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 225 KYRNRTQDTEYKSEKCRRL 281
           KY  R+  T + SE+C RL
Sbjct: 155 KYNGRSLQTHWLSEQCNRL 173


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 RFTGSVGRSSYKYRNRTQDTEYKS 263
           RFT +   +  +YR    DTEY+S
Sbjct: 687 RFTSAYQFAVLRYRGAPTDTEYES 710


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,373
Number of Sequences: 2352
Number of extensions: 15016
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)