Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17e03
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    38   0.002
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     29   0.53 
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    29   0.70 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.92 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.2  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    28   1.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.6  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   2.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   4.9  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   4.9  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.9  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.6  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 744 KWQEFAXXXXXXXXXXXK-LQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDM 568
           KWQ FA             L +DE   +WVP +G+K    E E  WL+E  +    +T  
Sbjct: 92  KWQRFARIKGIAPKKREGRLVFDEASGEWVPKWGYKGKNKELETQWLVEEGEKEKKLTSK 151

Query: 567 YEKKAGEKSEK 535
             +   +K ++
Sbjct: 152 QVRNTSKKIKR 162


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
 Frame = -2

Query: 494 EPKRLKYQGWGFLSLQI---KLLPHSYPQQQV*QKHQRLLLENSKINYPKRKKHAVK 333
           +P+++++     LSL +     +  S P+ +  Q HQ++LL+  K+++P+RK+++ K
Sbjct: 133 QPRKMQFLSLEPLSLLLLKDSFINKSNPEYESMQ-HQQILLKKLKLHFPRRKENSWK 188


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = +2

Query: 422 DNCVAEALSEVT---GSPTLGILTFLALARFLS-LCNSFFATFSDFSP-----AFFSYIS 574
           D CVA A S V    GSP  G+L  + + +F+  L NSF      + P     +FF  +S
Sbjct: 281 DICVASAASGVAVAFGSPIGGVLFGIEVGKFIEILTNSFKEMSGGYDPKMIVYSFFCCLS 340

Query: 575 VIG 583
            +G
Sbjct: 341 AVG 343


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 542  DFSPAFFSYISVIGSKFCGTSISQFFSFSAAVFLKPYKGT 661
            +F+PA+F YIS +      T++++ F F       P  GT
Sbjct: 1725 NFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGT 1764


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 554 AFFSYISVIGSK--FCGTSISQFFSFSAAVFL 643
           A+FSY  V+ S   FCG ++  ++ F   +FL
Sbjct: 74  AYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFL 105


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 72  VSWLRNLLHCLYLEF-YVFLSRVSYFSF--RVIS*LPLRLYFSLQLYPYQFL 218
           V +L  +L+ +Y EF  VF S  S+      ++S      +FSLQL  YQF+
Sbjct: 269 VRYLEEVLNAMYEEFDNVFKSEASFIKTFDALVSKYSDTTFFSLQLELYQFI 320


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -1

Query: 672 LQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 493
           L KW P    K+T   K     +E+   L P T+  +  AG+K    AKN  Q+  +  +
Sbjct: 162 LLKWAPQLEVKQTLDRK----FLEL---LGPKTEQ-DAAAGKKKGAKAKNSKQKTVDSGK 213

Query: 492 AKKVKI 475
           AK+ KI
Sbjct: 214 AKEQKI 219


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -1

Query: 330 VHELIPGKERKRKAPIPTPAAEKEYNLNLLD--NILSKRPKIDMDKAVAKSINEEEVKRS 157
           V +L   K   R+  IPT   E ++  N     N L     +D    ++KS+N +   +S
Sbjct: 224 VRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLDSSSTLSKSVNSKINLKS 283

Query: 156 HEKKNMKPGLGKRKTQGK 103
           H+  +      ++ T  +
Sbjct: 284 HQSSSSVQNSSRKLTSSQ 301


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
 Frame = -1

Query: 345  ARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLD-------NILSKRPKIDMDKAVAK 187
            +RG    E IP K  K K      AA+ +     LD       ++L+K  + ++++A +K
Sbjct: 1841 SRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSK 1900

Query: 186  SIN--EEEVKRSHEKKNMKP 133
                 E+   + H KK+ KP
Sbjct: 1901 KPGYVEKNKDKGHMKKSKKP 1920


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 648 GFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 493
           G KK A    K    E   +L+  +D     +GE  + +A+N LQ +K + R
Sbjct: 360 GAKKPAIRNAKKMSNEKDDSLNSQSD---SASGEFIKTIARNNLQEIKQVER 408


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 350 FSLGNLSWNFPREAVDAFAT----LAAVDNCVAEALSEVTGSPTLGILTFLALARF 505
           F  GN  W   +  +D+ +     L  + +C+ +ALS  +    L +L   A ARF
Sbjct: 220 FQTGNTDWKVCKALLDSASNDDSKLVPLKDCILKALSTSSTKRNLHLLWIEASARF 275


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 264 KEYNLNLLDNILSKRPKIDMDKAVAKSINEEEVKRSHEKKN 142
           KEYN ++  ++  KRP +   + VA SI+++ +K   + K+
Sbjct: 153 KEYNESMQSSVTHKRPLV--TRGVAMSIDDKALKALSDLKS 191


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 585 DPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 493
           DP  D Y ++A EK+E++A NE Q++  + +
Sbjct: 171 DPFFDSYLEQAFEKAERLA-NEQQKISKVEK 200


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 660 VPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKK 484
           +P+Y   KT  +K +   +EV +  D + + Y KKA  K  +V       +  + R K+
Sbjct: 411 IPVYRTTKTKMKKNRFKYVEVEKLPDLILESYGKKA-PKFLRVFARSSSHIPKMIRRKR 468


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 299 FLSLPGISSCTPLPRASFSLGNLSWNFPREAVDAFATLAAVDN 427
           +LS+ G+ S +        + N+SWNF    V++F +   VDN
Sbjct: 266 YLSIKGLFSSSTCLELYELIRNISWNF--IGVESFNSFRDVDN 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,030
Number of Sequences: 5004
Number of extensions: 57943
Number of successful extensions: 218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)