Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e03
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-7|CAB02731.1| 333|Caenorhabditis elegans Hypothetical pr... 100 2e-21
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 34 0.12
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 33 0.21
AL132862-23|CAB60559.1| 540|Caenorhabditis elegans Hypothetical... 33 0.28
AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical... 32 0.37
U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical pr... 31 0.65
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 31 0.65
Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical pr... 31 0.86
AL132863-10|CAN99717.1| 181|Caenorhabditis elegans Hypothetical... 31 1.1
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 30 1.5
U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 1.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 1.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 1.5
AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical ... 30 2.0
Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 29 3.5
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 29 3.5
AL032652-6|CAA21710.2| 752|Caenorhabditis elegans Hypothetical ... 29 3.5
AL032652-5|CAB63399.1| 579|Caenorhabditis elegans Hypothetical ... 29 3.5
AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine re... 29 4.6
DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic mul... 28 6.1
AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical... 28 6.1
U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical pr... 28 8.0
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 28 8.0
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 28 8.0
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.0
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.0
AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical ... 28 8.0
>Z81035-7|CAB02731.1| 333|Caenorhabditis elegans Hypothetical
protein C15H11.9 protein.
Length = 333
Score = 99.5 bits (237), Expect = 2e-21
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Frame = -1
Query: 744 KWQEFAXXXXXXXXXXXKLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNL-DPMTDM 568
KW+++A K +DE ++W P YG+++ + K+WLIE+P N DP D
Sbjct: 89 KWEKYAAEKGIEKRKKDKKVFDEATKEWKPTYGYRR-GNDDTKDWLIEIPDNAEDPNKDF 147
Query: 567 YEKKAGEKSEKVAKNELQRLKNLARAKKVKI-------PRVGLPVTSDKASATQLXXXXX 409
+ ++ +K E+VAKN++QR+KNLAR K + +G+ V + + S Q+
Sbjct: 148 FAERREKKKERVAKNDMQRMKNLARQMKTTVKSGPSTEKMIGVGVDAKEKSKQQVRFAVD 207
Query: 408 XXXXXXXSLGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNIL 229
S GKFQ+ L EK + GK+RK +A + EKE L +L +
Sbjct: 208 RAKLATASAGKFQEGLKGEKA-------NVKTGKKRKFEANEAPVSGEKERALQILQRMK 260
Query: 228 SKRPKIDMDKAVAKSINEEEVKRSHEKKNMK 136
SK+ KI +KA A + E K E+K K
Sbjct: 261 SKKAKIVEEKAAAVAGPLREKKEKSERKGAK 291
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 684 WDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLD-PMTDMYEKKAGEKSEKVAK--NELQ 514
WDE+ ++WVP K E ++++ E N D+Y+K E EK AK E +
Sbjct: 93 WDEEKKEWVP----KAKQEEVNEDFIAEYQANYGVQYDDIYKKMDEELQEKAAKAQKEDE 148
Query: 513 RLKNLARAKKV 481
K R KKV
Sbjct: 149 EKKEKKRKKKV 159
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = -1
Query: 366 KLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVAK 187
K +E+EAR K EL +E KRK + +KE L + ++ K +++ +
Sbjct: 554 KKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKE-ELEIKRKAEEEKKKKALEEEKKR 612
Query: 186 SINEEEVKRSHEKKNMK 136
I EE+ ++ EK+ K
Sbjct: 613 KIAEEKARQKQEKERKK 629
>AL132862-23|CAB60559.1| 540|Caenorhabditis elegans Hypothetical
protein Y73F8A.30 protein.
Length = 540
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 407 TLAAVDN--CVAEALSEVTGSPTLGILTFLALARFLSLCNSFFATFSDFSPAF-FSYISV 577
TL AV A SE +LGI + LA++ + + + T SDF P F Y+S+
Sbjct: 229 TLVAVTGFFTAASTSSERREKLSLGIDSLLAMSILMMMVSEQMPTSSDFVPLFGIFYLSI 288
Query: 578 IGSKFCGTSISQF 616
I F GT + F
Sbjct: 289 IFIIFIGTLFTAF 301
>AL132948-28|CAD31828.1| 263|Caenorhabditis elegans Hypothetical
protein Y39B6A.36 protein.
Length = 263
Score = 32.3 bits (70), Expect = 0.37
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Frame = -1
Query: 624 KEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVG--LPVT 451
K WL++VP+ L + D E K + A+ EL K L K K P G VT
Sbjct: 17 KRSIWLVKVPRYLSELWDANEGNVVGKLQIGAQVELHTAKGLIHPKP-KEPTEGSSSTVT 75
Query: 450 SDKASATQLXXXXXXXXXXXXSLGKF-QDKLPKEKEARGKGVHELIPGKERKRKAPIPTP 274
+AS ++ +DK +A K I G+ K KA P
Sbjct: 76 QPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPIKTGKLAIEGRIIK-KAECRPP 134
Query: 273 AAEKEYNLNLLDNILSKRPK--IDM-DKAVAK----SINEEEVKRSHEKKN 142
A K + L + + +PK + M +KA K S++ E++ +S +KK+
Sbjct: 135 ATSKYMKMKLAHIVKNTQPKKTVKMIEKAAVKFKPVSVHAEDMIKSKQKKD 185
>U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical
protein R11B5.1 protein.
Length = 614
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -1
Query: 612 WLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVT 451
W + + ++ ++Y+ + EK+AK ++ KN A K+ + ++ L T
Sbjct: 308 WFLTIGNQIEITKELYDGLMDQAEEKIAKQLAEQNKNSAERKETSVTQIHLDAT 361
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.65
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -1
Query: 369 DKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVA 190
DK KEKE K + E KE KRK ++E + D +KR K + +K A
Sbjct: 131 DKEKKEKERLDKKLEE-DKKKEEKRKEAEEKKKKDEEEKMKK-DEERNKRKKEEEEKKEA 188
Query: 189 KSINEEEVKRSHEKK 145
K +EE K + K+
Sbjct: 189 KRREDEEKKEAKRKE 203
>Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical
protein C47A4.2c protein.
Length = 383
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 518 NSFFATFSDFSPAFFSYISVIGSKFCGTSIS 610
NSFF +DF PA +S VIG+ CGT S
Sbjct: 111 NSFFGMAADF-PAKYSNAVVIGTNICGTFTS 140
>Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical
protein C47A4.2b protein.
Length = 451
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 518 NSFFATFSDFSPAFFSYISVIGSKFCGTSIS 610
NSFF +DF PA +S VIG+ CGT S
Sbjct: 179 NSFFGMAADF-PAKYSNAVVIGTNICGTFTS 208
>Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical
protein C47A4.2a protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 518 NSFFATFSDFSPAFFSYISVIGSKFCGTSIS 610
NSFF +DF PA +S VIG+ CGT S
Sbjct: 173 NSFFGMAADF-PAKYSNAVVIGTNICGTFTS 202
>AL132863-10|CAN99717.1| 181|Caenorhabditis elegans Hypothetical
protein Y37H2A.14 protein.
Length = 181
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -2
Query: 560 RKPVKNQKRLQRMNYRD-LRISLEPKRLKYQGW 465
+KP K QK+L++ +YR+ + +S EP+ ++ +G+
Sbjct: 123 KKPKKTQKKLKKPSYREVVEVSTEPQTIEEKGF 155
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 30.3 bits (65), Expect = 1.5
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 6/141 (4%)
Frame = -1
Query: 582 PMTDMYEKKAGE----KSEKVAKNELQRLKNLARA--KKVKIPRVGLPVTSDKASATQLX 421
P +D+ E +A +SE V +E + KN A K+ K P A + Q+
Sbjct: 18 PTSDVEEDEAAPDLKAESEDVTSSEEMQNKNPVSAPEKRAKTASFSPPPALSPAHSIQME 77
Query: 420 XXXXXXXXXXXSLGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLL 241
S + + KLPK E R K V++ P KE K P P A K +
Sbjct: 78 NEEIEVKMEVDS-DEEEKKLPKITEKRAKMVYKKKPEKE-KEAVPFIDPNAPKRNRSGYV 135
Query: 240 DNILSKRPKIDMDKAVAKSIN 178
I+ +R + IN
Sbjct: 136 HFIIHRRASYSKAVMSQREIN 156
>U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical
protein C43G2.2 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 672 LQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 493
L+ V + G K ++ +I+V L + G ++EK + +++L+ LAR
Sbjct: 381 LRTLVLVAGEKSAQLAAAQDAMIQVSDQLYQFYHQMTQNQGVQTEKSVQEIVKKLRLLAR 440
Query: 492 AKKVKIPRVGL 460
A +PRV L
Sbjct: 441 ANAEDVPRVSL 451
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.3 bits (65), Expect = 1.5
Identities = 34/152 (22%), Positives = 63/152 (41%)
Frame = -1
Query: 564 EKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLXXXXXXXXXXXXS 385
+K A EKS+ A+++L++ + AKK K L + ++ AS
Sbjct: 9826 KKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEAASKKAAAEKLELEKQAQIK 9885
Query: 384 LGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDM 205
D + KEKE K + + + +KA E++ + + K+ K
Sbjct: 9886 KAAEADAVKKEKELAEK---QKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQ-KEQE 9941
Query: 204 DKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQ 109
A +S E + K+S EK+ ++ +KT+
Sbjct: 9942 KLAQEQSKLEVDAKKSAEKQKLESETKSKKTE 9973
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.3 bits (65), Expect = 1.5
Identities = 34/152 (22%), Positives = 63/152 (41%)
Frame = -1
Query: 564 EKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLXXXXXXXXXXXXS 385
+K A EKS+ A+++L++ + AKK K L + ++ AS
Sbjct: 9846 KKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEAASKKAAAEKLELEKQAQIK 9905
Query: 384 LGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDM 205
D + KEKE K + + + +KA E++ + + K+ K
Sbjct: 9906 KAAEADAVKKEKELAEK---QKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQ-KEQE 9961
Query: 204 DKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQ 109
A +S E + K+S EK+ ++ +KT+
Sbjct: 9962 KLAQEQSKLEVDAKKSAEKQKLESETKSKKTE 9993
Score = 29.5 bits (63), Expect = 2.6
Identities = 34/152 (22%), Positives = 62/152 (40%)
Frame = -1
Query: 564 EKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLXXXXXXXXXXXXS 385
+K A EKS+ A+++L++ + AKK K L + ++ AS
Sbjct: 13479 KKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEAASKKAAAEKLELEKQSHIK 13538
Query: 384 LGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDM 205
D + K+KE K + + + +KA E E + L + K
Sbjct: 13539 KAAEVDAVKKQKELEEK---QRLESEAATKKADAEKLKLE-EQKKKAAEIALIEIQKEQE 13594
Query: 204 DKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQ 109
A +S E+E K+S EK+ ++ ++T+
Sbjct: 13595 KLAQEQSRLEDEAKKSAEKQKLESETKSKQTE 13626
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.3 bits (65), Expect = 1.5
Identities = 34/152 (22%), Positives = 63/152 (41%)
Frame = -1
Query: 564 EKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLXXXXXXXXXXXXS 385
+K A EKS+ A+++L++ + AKK K L + ++ AS
Sbjct: 9846 KKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEAASKKAAAEKLELEKQAQIK 9905
Query: 384 LGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDM 205
D + KEKE K + + + +KA E++ + + K+ K
Sbjct: 9906 KAAEADAVKKEKELAEK---QKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQ-KEQE 9961
Query: 204 DKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQ 109
A +S E + K+S EK+ ++ +KT+
Sbjct: 9962 KLAQEQSKLEVDAKKSAEKQKLESETKSKKTE 9993
Score = 29.5 bits (63), Expect = 2.6
Identities = 34/152 (22%), Positives = 62/152 (40%)
Frame = -1
Query: 564 EKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLXXXXXXXXXXXXS 385
+K A EKS+ A+++L++ + AKK K L + ++ AS
Sbjct: 13479 KKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEAASKKAAAEKLELEKQSHIK 13538
Query: 384 LGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDM 205
D + K+KE K + + + +KA E E + L + K
Sbjct: 13539 KAAEVDAVKKQKELEEK---QRLESEAATKKADAEKLKLE-EQKKKAAEIALIEIQKEQE 13594
Query: 204 DKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQ 109
A +S E+E K+S EK+ ++ ++T+
Sbjct: 13595 KLAQEQSRLEDEAKKSAEKQKLESETKSKQTE 13626
>AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical
protein Y40B1B.7 protein.
Length = 123
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 240 DNILSKRPKIDMDKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQGKGNA 94
D + + K DM K V +I E++V+ EKK K KR+ + + A
Sbjct: 42 DKKMELKAKKDMVKRVQDNIREKQVQERQEKKERKVEQEKRRLENERKA 90
>Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical
protein K02E11.1 protein.
Length = 729
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 467 TLGILTFLALARFLSLCNSFFATFSDFSPAFFSYISVIGSKFCGTSIS 610
TLG + L A L NS F S F P ++ +IG FCGT+++
Sbjct: 433 TLGTIVVLNAANGL-FQNSMFGLASPF-PFKYTNAVIIGQNFCGTAVT 478
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -1
Query: 351 KEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVAKSINEE 172
K+ R +E P K R+R + ++K+ + + KRPK+ ++ A S
Sbjct: 1021 KKQRKVAENEKNPSKLRRRLLEASSDKSDKDERTSCPSS--KKRPKLAENEKNAASPPTR 1078
Query: 171 EVKRSHEKKNMKPGLGKRKTQ 109
+ + KN KPG K Q
Sbjct: 1079 HQQNGSKDKNEKPGCSSTKKQ 1099
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -1
Query: 351 KEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVAKSINEE 172
K+ R +E P K R+R + ++K+ + + KRPK+ ++ A S
Sbjct: 1021 KKQRKVAENEKNPSKLRRRLLEASSDKSDKDERTSCPSS--KKRPKLAENEKNAASPPTR 1078
Query: 171 EVKRSHEKKNMKPGLGKRKTQ 109
+ + KN KPG K Q
Sbjct: 1079 HQQNGSKDKNEKPGCSSTKKQ 1099
>AL032652-6|CAA21710.2| 752|Caenorhabditis elegans Hypothetical
protein Y63D3A.6b protein.
Length = 752
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 192 AKSINEEEVKRSHEKKNMKPGLGKRKTQGKG 100
A ++ EEEVK+ + KP K+K QG+G
Sbjct: 510 AATVEEEEVKKRKPWEKNKPKQKKKKAQGQG 540
>AL032652-5|CAB63399.1| 579|Caenorhabditis elegans Hypothetical
protein Y63D3A.6a protein.
Length = 579
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 192 AKSINEEEVKRSHEKKNMKPGLGKRKTQGKG 100
A ++ EEEVK+ + KP K+K QG+G
Sbjct: 510 AATVEEEEVKKRKPWEKNKPKQKKKKAQGQG 540
>AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein142 protein.
Length = 361
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 476 ILTFLALARFLSLCNSFFATFSDFS--PAFFSYISVIGSKFCGTSISQFFSFSAAVFLKP 649
+L +AL R L + N + + P F I V+ FC SIS F + +F +
Sbjct: 131 LLFSIALIRTLVIRNPMKTEYEKLTKPPTSFLAIIVVSLVFCPISISTFLEYD--IFSEK 188
Query: 650 YKGT 661
YK T
Sbjct: 189 YKST 192
>DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic
multivulva protein LIN-8 protein.
Length = 386
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -1
Query: 687 QWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNEL 517
Q + + +W YGF + + + W ++ ++LD + + ++A + EKV EL
Sbjct: 139 QVEAYMWRW-EFYGFIRYYRDYTQRWEADLLKDLDVVLGLEARRASKNMEKVDSGEL 194
>AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical
protein B0454.1 protein.
Length = 386
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -1
Query: 687 QWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNEL 517
Q + + +W YGF + + + W ++ ++LD + + ++A + EKV EL
Sbjct: 139 QVEAYMWRW-EFYGFIRYYRDYTQRWEADLLKDLDVVLGLEARRASKNMEKVDSGEL 194
>U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical
protein R04E5.9 protein.
Length = 175
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 294 KAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVA-KSINEEEVKRSHEKKNMK 136
K P P PA K N+LD IL + K+ A KS + ++ + + N +
Sbjct: 120 KVPTPPPAPAKPTPSNILDQILFAQEKVLAPTDTARKSFTKNKILPNERRSNFE 173
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 282 PTPAAEKEYNLNLLDNILSKRPKIDMDKAVAK 187
P AA KEY + D PKID+DKAV +
Sbjct: 12 PLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVE 43
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 282 PTPAAEKEYNLNLLDNILSKRPKIDMDKAVAK 187
P AA KEY + D PKID+DKAV +
Sbjct: 76 PLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVE 107
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Frame = -1
Query: 690 LQWDEQLQKWVPL------YGFKKTAAEKEKNWL 607
L W+ + +KW P +G K AEK K W+
Sbjct: 620 LNWEMEFKKWCPALKILTYFGTAKERAEKRKGWM 653
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Frame = -1
Query: 690 LQWDEQLQKWVPL------YGFKKTAAEKEKNWL 607
L W+ + +KW P +G K AEK K W+
Sbjct: 620 LNWEMEFKKWCPALKILTYFGTAKERAEKRKGWM 653
>AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical
protein T01A4.3 protein.
Length = 710
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -1
Query: 633 AAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPV 454
+A +EK L V +NL+ + + AG K ++ + E R++ KK + R+ +P
Sbjct: 2 SANREKKKLETVIKNLEKKIEDQKANAGTKKKEAEQKENLRIEQEKIKKKKEQERLEVPP 61
Query: 453 T 451
T
Sbjct: 62 T 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,681
Number of Sequences: 27780
Number of extensions: 311688
Number of successful extensions: 1322
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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