Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17e01
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 200 1e-52
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 199 4e-52
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.55
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.72
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.96
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 28 1.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.9
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.1
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 6.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.9
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 200 bits (489), Expect = 1e-52
Identities = 100/228 (43%), Positives = 140/228 (61%), Gaps = 2/228 (0%)
Frame = -3
Query: 754 VTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXX 575
VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 60 VTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKY 119
Query: 574 XXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKR 395
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS R
Sbjct: 120 EGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNR 179
Query: 394 FPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAI 215
FPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E I
Sbjct: 180 FPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDI 239
Query: 214 YKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 77
Y +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 240 YAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 199 bits (485), Expect = 4e-52
Identities = 100/228 (43%), Positives = 139/228 (60%), Gaps = 2/228 (0%)
Frame = -3
Query: 754 VTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXX 575
VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 60 VTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKY 119
Query: 574 XXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKR 395
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS R
Sbjct: 120 EGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNR 179
Query: 394 FPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAI 215
FPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E I
Sbjct: 180 FPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDI 239
Query: 214 YKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 77
Y +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 240 YAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 226 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 68
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -3
Query: 211 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 41
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.96
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 199 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 68
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -3
Query: 277 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 98
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 97 KNRIKQKKASFIKRLQAQA 41
+ +Q+K +IK+++ +A
Sbjct: 449 DRQKEQRKKEYIKKVKKEA 467
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 295 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 134
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 601 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 693
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 229 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 116
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 298 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 125
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 124 KRKLTLAERKNRIKQKKAS 68
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 223 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 56
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3
Query: 238 TADAIEAIYKKAHEAIRADPSHKKKELK 155
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 6.7
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = -3
Query: 364 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 185
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 184 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 62
+ KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -3
Query: 223 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 44
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A K + Q
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 211 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 56
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 319 AEYMRSLEQDDEDSFKRQFSKYIK 248
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 225 LKPSTRKPMKPSVRIHPTRRK 163
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 211 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 71
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,271
Number of Sequences: 5004
Number of extensions: 57225
Number of successful extensions: 273
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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