Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d24
(780 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.11
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 25 0.60
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 0.79
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 25 1.0
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 1.0
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 24 1.4
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 24 1.4
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.8
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.8
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.4
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 3.2
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 5.6
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 5.6
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 7.4
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 9.7
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 9.7
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 9.7
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 9.7
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 9.7
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 9.7
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 27.9 bits (59), Expect = 0.11
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 536 PTLGTPLTAVLYRPLARPRQST 601
P +GTP T ++Y+P P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 25.4 bits (53), Expect = 0.60
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 754 NGNVNSIRNSNYNGNLPLFVIVPRLEQ 674
N N N+ N+NYN L+ + +EQ
Sbjct: 335 NNNYNNYNNNNYNNYKKLYYNIINIEQ 361
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 25.0 bits (52), Expect = 0.79
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGNL 707
NN+ NGN N N+N NG++
Sbjct: 250 NNNGANDNGNGNGASNNNNNGDM 272
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGN 710
+N+ IT GN N+ ++N N N
Sbjct: 223 SNNSTITAGNANTNASNNNNNN 244
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGN 710
NN+ N N N+ N N NGN
Sbjct: 240 NNNNNNNNNNNNNGANDNGNGN 261
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 24.6 bits (51), Expect = 1.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 95 VPSNMGNAVFGKRGNGIYGLRTGSSWPF*KY 3
VPS++ N V K+G G LR W F KY
Sbjct: 92 VPSSL-NVVTNKKGKGGPLLRPYPDWSFAKY 121
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGN 710
NN+ N N N+ N+NYN N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNN 346
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 24.2 bits (50), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 95 VPSNMGNAVFGKRGNGIYGLRTGSSWPF*KY 3
VPS++ N V K GNG L+ W F KY
Sbjct: 91 VPSSL-NVVSDKTGNGGRLLQPYPDWSFAKY 120
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 358 TTPPGPSRIQTGNPVGSATSLSSS 429
TTP PSR Q+ + SA ++S+S
Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGN 710
NN++ N N+ N+NYN N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNN 108
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 754 NGNVNSIRNSNYNGN 710
N N N+ N+NYN N
Sbjct: 98 NNNYNNNYNNNYNNN 112
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGN 710
NN++ N N+ N+NYN N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNN 108
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 754 NGNVNSIRNSNYNGN 710
N N N+ N+NYN N
Sbjct: 98 NNNYNNNYNNNYNNN 112
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 586 TTPVHNNNVAVGDGQQGGAD 645
+ P +N + GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 586 TTPVHNNNVAVGDGQQGGAD 645
+ P +N + GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.0 bits (47), Expect = 3.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYN 716
NN++ N N+ N+NYN
Sbjct: 320 NNYKYSNYNNYNNYNNNNYN 339
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.2 bits (45), Expect = 5.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 775 NNHQVITNGNVNSIRNSNYNGNLPLFVIVPRLEQ 674
NN+ N N + N+NYN L+ + +EQ
Sbjct: 93 NNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQ 126
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 194 RL*EQVLTLQPGWGFLPPLG*KSP 265
R+ + LQPG F PLG + P
Sbjct: 458 RMDRDAVYLQPGMSFGEPLGLRRP 481
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 748 NVNSIRNSNYNGNLPLFVIVPRLEQ 674
N N+ N+NYN L+ + +EQ
Sbjct: 92 NNNNYNNNNYNNYKKLYYNINYIEQ 116
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 434 VTLDDRLVADPTGLPVW 384
+TLDD++ P P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 434 VTLDDRLVADPTGLPVW 384
+TLDD++ P P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 748 NVNSIRNSNYNGN 710
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 748 NVNSIRNSNYNGN 710
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 748 NVNSIRNSNYNGN 710
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 748 NVNSIRNSNYNGN 710
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,501
Number of Sequences: 438
Number of extensions: 6864
Number of successful extensions: 41
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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