Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d23
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    31   0.25 
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   3.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   4.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +2

Query: 488 YYRIFQTFKPALYSLDTKLFSLSNIFKYLKIYKINSL-IDCMNQIKC--NQNMQIHTN-- 652
           + R F+  KPAL    +KLF L++ F +  + K   L    +N   C  NQ  Q H N  
Sbjct: 155 FVRDFRADKPALRLAPSKLFYLASRFAFFYMPKEKELGTVLLNAFLCEVNQVTQQHPNDM 214

Query: 653 -*CLSRIELFTLLLFFMDHHQNL 718
             C+  +   +LLLF++     L
Sbjct: 215 VLCVQWLANVSLLLFYLKKDNKL 237


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 329 VARTFYHFKSG-GLCICAHNFQNNIESIGYQMS 424
           VA+TF ++ SG GL +CA   Q ++    YQ++
Sbjct: 221 VAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLN 253


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +2

Query: 158 LRRN*TLL*FCLT*IIAFFKKWQCYIIIK----LLNFKYLCSLQEAVCRLYS 301
           L+R   LL +    I+  F +++ Y+I++    + NFK++  +  A+C +YS
Sbjct: 84  LKRPFFLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVIILHAMCSVYS 135


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 521 LYSLDTKLFSLSNIFKYLKIYKIN 592
           L ++D + +SL+++ ++LK+YK N
Sbjct: 23  LQNVDKQDWSLNSVLQFLKLYKFN 46


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 500 FQTFKPALYSLDTKLFSLSNIFKYLKIYKINSLIDCMNQIKCNQNMQI 643
           F  F  A + LD    S      + +  K+N  +D   Q+K N NMQ+
Sbjct: 280 FVKFLNASFRLDYPDLSYLYQMDFSEPSKVNEQLDWRLQVKRNSNMQV 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,728
Number of Sequences: 5004
Number of extensions: 50899
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)