Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d23
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    30   2.2  
Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 581 YKINSLIDCMNQIKCNQNMQIHTN*CLSRIELFTLLLFFMDHHQNLGLHQRNLQKNYHHL 760
           Y +   +D   Q+    N  +H +    R++    L  F D+  ++G   +NLQ   HH+
Sbjct: 65  YSVQQCLDNSEQLAQLHNQLVHCDNVFERLQ--ATLYSFQDNLGSIGQDMKNLQLQSHHI 122


>Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical
           protein ZK938.7 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 554 SNIFKYLKIYKINSLIDCMNQIKCNQNMQ 640
           +N+++   IY+   ++ C +  KCNQ ++
Sbjct: 49  NNVYELTAIYEATEVVRCWDSFKCNQKLE 77


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 470 IIKFF-NYYRIFQTFKPALYSLDTKLFSLSNIFKYLKIYKINSLIDCMNQI 619
           I+ FF +Y+ I      + + L TK+  L N+F Y  +Y+I+  I+ +  +
Sbjct: 32  ILAFFASYFAIKIVINQSFFELSTKILLLQNLF-YTNLYQISYGIEAIGML 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,324
Number of Sequences: 27780
Number of extensions: 278166
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)