Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d22
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 147 1e-36
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 124 1e-29
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 124 1e-29
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 107 1e-24
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 85 7e-18
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 85 7e-18
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 85 9e-18
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 80 2e-16
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 72 9e-14
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 38 0.002
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 35 0.009
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 32 0.064
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 32 0.064
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 31 0.15
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.4
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 3.2
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.2
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 7.4
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 147 bits (356), Expect = 1e-36
Identities = 78/164 (47%), Positives = 106/164 (64%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
+ +V QEP L+ T+ ENI G S+ + +E IH FI+ LP GY T
Sbjct: 1197 IALVSQEPTLYQGTVRENIVLGA-SKDVSEEEMIEACKKANIHEFILGLPNGYNTLCGQK 1255
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
QKQR+ IARALIR+P++LLLDEATSALD++SE+ V EAL+ A++GRT + IAH
Sbjct: 1256 GSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAH 1315
Query: 302 RLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQNV 171
RL++I+DAD I V D G I E G HAEL+ +G Y++L +Q +
Sbjct: 1316 RLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYELVVEQGL 1359
Score = 138 bits (333), Expect = 9e-34
Identities = 77/172 (44%), Positives = 112/172 (65%), Gaps = 7/172 (4%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYG-DNSRKPTMDEXXXXXXXXXI------HNFIVSLPKGY 504
+ +VQQEP+LF T+ ENI YG ++ K T+ + ++FI++LP+ +
Sbjct: 498 ISLVQQEPVLFATTVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFIMTLPEQF 557
Query: 503 ETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGR 324
TN QKQR+ IARA+I P++LLLDEATSALD+ SE V +ALD+A++ R
Sbjct: 558 STNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRSR 617
Query: 323 TCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQNVT 168
T I IAHRL+TI++AD I V++ GKIVE+G+H EL+ L G Y +L + Q ++
Sbjct: 618 TTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARLVEAQKLS 669
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 124 bits (299), Expect = 1e-29
Identities = 67/153 (43%), Positives = 90/153 (58%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
+GVV Q+ LF+ T+ NI Y S T +E IH+ I+ P GY +
Sbjct: 660 IGVVPQDSTLFNDTILYNIKYAKPSA--TNEEIYAAAKAAQIHDRILQFPDGYNSRVGER 717
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
+KQRV +ARA+++ P ++LLDEATSALD N+ER + AL+ A GRT I IAH
Sbjct: 718 GLKLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAH 777
Query: 302 RLTTIKDADIICVLDKGKIVEKGNHAELIGLKG 204
RL+TI +AD+I + G+IVE G H ELI G
Sbjct: 778 RLSTITNADLILCISNGRIVETGTHEELIKRDG 810
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 124 bits (299), Expect = 1e-29
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
+GVV Q+ LF+ T+ NI YG+ K + DE IH+ I S P+GY+T
Sbjct: 519 IGVVPQDTPLFNDTILYNIGYGNP--KASNDEIVEAAKKAKIHDIIESFPEGYQTKVGER 576
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKG--RTCITI 309
+KQR+ ++R L+++P +L DEATSALD N+ERA+ ++ KG +T + I
Sbjct: 577 GLMISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLIKGSHKTSVFI 636
Query: 308 AHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQ 177
AHRL TIKD DII VL+KG++VE+G+H +L+ Y + Q
Sbjct: 637 AHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMWHSQ 680
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 107 bits (257), Expect = 1e-24
Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Frame = -3
Query: 659 GVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXXX 480
G+V QEP+LF T+ ENIAYG ++ E +F++S P+ + T
Sbjct: 561 GLVGQEPVLFSGTIGENIAYGKSNAS---QEEIEDAAKRANCSFVLSFPEKWSTQVGTRG 617
Query: 479 XXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGR--TCITIA 306
QKQR+ IARAL+R+P L+LDEATSALD +E V + + R T ITIA
Sbjct: 618 LQLSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIA 677
Query: 305 HRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQ 177
H+L TI+ AD I V+ GK++E+G+ L ++++L + Q
Sbjct: 678 HKLATIRRADQIIVVGDGKVLEQGSFERLSRPGTNFYKLMRWQ 720
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 85.4 bits (202), Expect = 7e-18
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 1/165 (0%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
L ++ QE F+ T+ EN+ D + T +E + FI +L G +
Sbjct: 1301 LAIIPQENQAFEGTIRENL---DPNANATDEEIWHALEAASLKQFIQTLDGGLYSRVTEG 1357
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
Q+Q +C+ RAL+ R+LLLDEAT+A+D ++ V + RT +TIAH
Sbjct: 1358 GANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILTIAH 1417
Query: 302 RLTTIKDADIICVLDKGKIVEKGNHAELIGLKGH-YWQLSKQQNV 171
R+ T+ D++ I VLD GK+VE + +L+ K ++ L+K+ +
Sbjct: 1418 RINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSLAKESGL 1462
Score = 49.6 bits (113), Expect = 4e-07
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Frame = -3
Query: 647 QEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXXXXXXX 468
Q+P + + T+ ENI +G P E +F + L G +T
Sbjct: 651 QQPWILNATIQENILFG-LELDPEFYEKTIRACCLL-RDFEI-LADGDQTEVGEKGISLS 707
Query: 467 XXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL---DHAAKGRTCITIAHRL 297
QK R+ +ARA+ + LLD+ SA+D + R + L + R I + L
Sbjct: 708 GGQKARISLARAVYSRSDIYLLDDILSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTNSL 767
Query: 296 TTIKDADIICVLDKGKIVEKGNHAEL 219
T +K+A +I +L GKI+E G+ +L
Sbjct: 768 TVLKEASMIYMLRNGKIIESGSFTQL 793
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 85.4 bits (202), Expect = 7e-18
Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYG-DNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXX 486
+ +V Q+P L T+ E++ YG D MD I N LP G +T
Sbjct: 1176 VAIVDQKPHLLGSTILESLLYGVDRDINSVMDALDKTYMTEVIQN----LPNGLDTPLLE 1231
Query: 485 XXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIA 306
Q QR+ ARAL+R+PRLL+LDE TSALD+ S + + + + + T + I
Sbjct: 1232 FSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQNLS--CTVLIIT 1289
Query: 305 HRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQL 189
H+ + +K AD I V+D G + E G+ EL+ H+W+L
Sbjct: 1290 HQPSLMKLADRIIVMDSGIVKESGSFDELMNRHTHFWKL 1328
Score = 80.6 bits (190), Expect = 2e-16
Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Frame = -3
Query: 656 VVQQEPILFDRTLAENIAY-GDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXXX 480
+V Q+P++FD T+ ENI +N+ + +E F ++ + Y+T
Sbjct: 514 LVCQQPVIFDMTIRENIIMRNENASESDFEEVCRLALVD---EFALTFDQSYDT--PCKE 568
Query: 479 XXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAHR 300
Q+QR+ +ARAL+R +L+LDE TSALD ++ V +A+ KG+T + I H
Sbjct: 569 ASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHD 628
Query: 299 LTTIKDADIICVLDKGKIVEKGNHAELI 216
++ I + +++ V+DKG ++++ EL+
Sbjct: 629 MSQINNDELVLVIDKGHLIQRCARKELV 656
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 85.0 bits (201), Expect = 9e-18
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
L ++ QE +F+ + EN+ D + + T + + N I L G +
Sbjct: 1303 LSIIPQESQIFEGNIRENL---DPNHRLTDKKIWEVLEIASLKNCISQLEDGLYSRVAEG 1359
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
Q+Q +C+AR L+ S R+LLLDEAT+++ A ++ V + + K RT +T+AH
Sbjct: 1360 GANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTILTVAH 1419
Query: 302 RLTTIKDADIICVLDKGKIVEKGNHAELIGLK-GHYWQLSKQQNV 171
R+ T+ D+D I VLD GK+VE +L+ K ++ L+K+ +
Sbjct: 1420 RINTVMDSDRILVLDHGKVVEFDATKKLLENKDSMFYSLAKESGL 1464
Score = 60.5 bits (140), Expect = 2e-10
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
L Q+P +FD T+ ENI +G P + E +F + +G +T
Sbjct: 644 LAYAAQQPWIFDATIRENILFGSEF-DPELYEKTIHACCLK-RDFEI-FTEGDQTEVGQK 700
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKG--RT-CIT 312
QK R+ +ARA+ + LLD+ S++D + R + + L +G RT C+
Sbjct: 701 GASLSGGQKSRISLARAIYSQADIYLLDDVLSSVDQHVSRDLIKNL-FGPEGFLRTHCVV 759
Query: 311 IA-HRLTTIKDADIICVLDKGKIVEKGNHAEL 219
+ + L +K+AD I +L GKIVEKGN+ L
Sbjct: 760 LTTNSLNVLKEADSIYILSNGKIVEKGNYEHL 791
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 80.2 bits (189), Expect = 2e-16
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENI----AYGDNSRKPTMDEXXXXXXXXXIH-NFIVSLPKGYET 498
+ ++ Q+P+L T+ N+ YGD + + N + + +T
Sbjct: 1257 ISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDT 1316
Query: 497 NXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTC 318
Q+Q + +ARAL+R R+++LDE+T+++D ++R + + L A K T
Sbjct: 1317 PVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATV 1376
Query: 317 ITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQNVT 168
+ IAHR+ TI D D + VLD GK VE G+ L + +W++ K+ +++
Sbjct: 1377 LCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSLYTQRRAFWKMCKESHIS 1426
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEA--LDHAAKGRTCITIAHRLT 294
KQRV +ARAL + + + D+ SALD ++ R + E+ L + +T I H ++
Sbjct: 712 KQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHKTIILFTHNVS 768
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 71.7 bits (168), Expect = 9e-14
Identities = 36/97 (37%), Positives = 58/97 (59%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAHRLTTIKDA 279
KQ + +ARA++R ++++LDE T+++D ++ + + L A T + IAHRL TI D
Sbjct: 1361 KQVLALARAIVRRSKIIILDECTASVDDAMDQKIQKTLREAFGDATMLCIAHRLKTIVDY 1420
Query: 278 DIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQNVT 168
D + VLDKG +VE G A L GH+ ++ +T
Sbjct: 1421 DKVMVLDKGVLVEYGPPAVLYHNNGHFRRMCDGSGIT 1457
Score = 33.9 bits (74), Expect = 0.021
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAA--KGRTCITIAHRLTTIK 285
KQR+ +ARA+ ++L+D+ SALD ++ + + ++ + RT I + H +
Sbjct: 745 KQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVILVTHNVHLFM 804
Query: 284 DADIICVLDK 255
D+ V K
Sbjct: 805 DSAAFIVTVK 814
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAHRLTTIKDA 279
++RV A + P +LLLDE T+ALD ++ A+ +AL++ G IT RL + A
Sbjct: 718 RRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLID-QVA 776
Query: 278 DIICVLDKGKIVE 240
+ I ++ G + E
Sbjct: 777 EEIWIVQNGTVKE 789
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
K ++ +ARA+++ +LLLDE T+ LD + A EA + K TC+ ++H
Sbjct: 568 KMKLELARAMLQKADILLLDEPTNHLDV-ANIAWLEAYLTSQKNITCLIVSH 618
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANS 369
K +V IA L +P+LL+LDE T+ LD ++
Sbjct: 916 KVKVVIAACLWNNPQLLVLDEPTNFLDRDA 945
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 32.3 bits (70), Expect = 0.064
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALD 378
+ RV ++RAL P LLLLDE T+ LD
Sbjct: 226 RMRVALSRALFIKPSLLLLDEPTNHLD 252
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 32.3 bits (70), Expect = 0.064
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL 345
+ R+ +ARAL P LLLLDE ++ LD S ++E L
Sbjct: 360 RMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYL 397
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 455 QRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL 345
+R +A L++ P+LLLLDE + LD S ++ L
Sbjct: 155 RRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLL 191
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 449 VCIARALIRSPRLLLLDEATSALD 378
+ RA+++ PRL++LDE +D
Sbjct: 414 ILFCRAIVKQPRLVVLDEPFQGVD 437
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 401 DEATSALDANSERAVTEALDHAAKGRTCITIAHRLTTIKDADIICVLDK 255
D ++S+ D NS T + + +A+ T T + T++KD D + DK
Sbjct: 309 DSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 159 ISSRDVLLFT*LPVMSLEANELCVVAFFYYFTFIQ 263
+SS + + +P++S NEL ++A F Y F++
Sbjct: 539 LSSMFIAFYKLMPIISKHLNELPIIASFDYTFFVR 573
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 619 SQRTSRTVTTVANLLWMKSL-QQLKRPIYTISSYL 518
S+ TS T+ T +L + L QQL + +YT+ SYL
Sbjct: 291 SEMTSSTILTPPSLTDTRQLMQQLDQLLYTLFSYL 325
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 222 LCVVAFFYYFTFI----QNTNDISVLDCS*TMSYSNASSAFGCMIQCLCYSPFTVGIQSR 389
+ VV F +F +I +N ND+S + ++ S S+ F CLC+ F + + +
Sbjct: 406 MIVVLLFGFFAYINEADKNGNDVSDTVFNWLLALSGLSNFFTWGSICLCHIIFRLAFKKQ 465
Query: 390 SCLIQE 407
++E
Sbjct: 466 GHSLKE 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,919
Number of Sequences: 5004
Number of extensions: 48917
Number of successful extensions: 153
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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