Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d20
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 404 e-114
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 1e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 8e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 30 0.44
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.4
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 25 9.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 9.4
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 404 bits (994), Expect = e-114
Identities = 199/214 (92%), Positives = 207/214 (96%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 17 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Query: 553 GMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 374
GMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 76 GMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135
Query: 373 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 194
NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRL
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 195
Query: 193 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 92
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 229
Score = 404 bits (994), Expect = e-114
Identities = 199/214 (92%), Positives = 207/214 (96%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 93 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151
Query: 553 GMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 374
GMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 211
Query: 373 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 194
NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRL
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 271
Query: 193 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 92
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 305
Score = 402 bits (991), Expect = e-113
Identities = 198/214 (92%), Positives = 207/214 (96%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 169 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227
Query: 553 GMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 374
GMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 287
Query: 373 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 194
NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRL
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 347
Query: 193 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 92
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
Score = 303 bits (743), Expect = 2e-83
Identities = 147/153 (96%), Positives = 153/153 (100%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 370 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 191
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 190 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 92
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 370 IQKESTLHLVLRLRGG-MQIFVKTLTGK 290
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (370), Expect = 4e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 IQKESTLHLVLRLRGGM 92
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 105 bits (253), Expect = 5e-24
Identities = 55/73 (75%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 17 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Query: 553 G-MQIFVKTLTGK 518
G ++ +K L K
Sbjct: 76 GIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 370 IQKESTLHLVLRLRGG-MQIFVKTLTGK 290
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (370), Expect = 4e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 IQKESTLHLVLRLRGGM 92
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 105 bits (253), Expect = 5e-24
Identities = 55/73 (75%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 17 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Query: 553 G-MQIFVKTLTGK 518
G ++ +K L K
Sbjct: 76 GIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 370 IQKESTLHLVLRLRGG 323
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 IQKESTLHLVLRLRGG 95
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 105 bits (251), Expect = 1e-23
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 17 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Query: 553 G 551
G
Sbjct: 76 G 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 370 IQKESTLHLVLRLRGG 323
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 IQKESTLHLVLRLRGG 95
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 105 bits (251), Expect = 1e-23
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = -1
Query: 733 VESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRG 554
VES T I+NVK+KIQDKEG PPDQQRL FAGKQLEDGRTLSDYNIQKE T HLVLRLRG
Sbjct: 17 VESSDT-IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Query: 553 G 551
G
Sbjct: 76 G 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 370 IQKESTLHLVLRLRGG 323
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 142 IQKESTLHLVLRLRGG 95
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = -1
Query: 712 IENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRLRGG 551
+ +K ++++KEG PP QQRL +AGKQ+ D + Y+++ HLVL LRGG
Sbjct: 23 VSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -1
Query: 520 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 359
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -1
Query: 292 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 131
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = -1
Query: 727 SIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKE 587
S T I +K KIQ ++ ++Q+L ++G+ L D +T+ +YNI+++
Sbjct: 19 SADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -1
Query: 550 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 371
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 370 IQKESTLHLVLRL 332
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -1
Query: 322 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 143
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 142 IQKESTLHLVLRL 104
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 33.1 bits (72), Expect = 0.047
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 730 ESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRTLSDYNIQKEXTXHLVLRL 560
ES ++ A + D E ++QRL +AG+ L+D +L Y IQ + HLV L
Sbjct: 23 ESSVLALKEAIAPVADIE---KERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -1
Query: 523 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 350
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -1
Query: 295 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 122
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 479 FDGVRCFNFQCDGFTGKCFHKNLHSTS 559
FDG + +N CD F GKCFHK +TS
Sbjct: 20 FDGYKIYN--CDPF-GKCFHKIQGATS 43
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 130 ILSGCCSQIVYGHLQAVCPQRSIAADPEE--FPL 225
+L+G C+ I+Y H V +R+ PE+ +PL
Sbjct: 379 VLAGACTPIIYVHYNRVYTRRNGVMSPEDRLYPL 412
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 358 ILSGCCSQIVYGRLQAVSPQRSIAADPEEFPLCPEFWLSHFRWCQMLQLPM*WF 519
+L+G C+ I+Y V +R+ PE+ L P F+ S ML + M WF
Sbjct: 379 VLAGACTPIIYVHYNRVYTRRNGVMSPED-RLYPLFFGS-----IMLPISMFWF 426
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 547 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 374
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 373 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 284
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 319 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 146
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 145 NIQKESTLHLVL 110
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.1
Identities = 29/113 (25%), Positives = 53/113 (46%)
Frame = +3
Query: 216 IPSLS*ILAFTFSMVSDASTSNVMVLPVSVLTKICMPPRSLKTKCRVDSFWML*SDSVRP 395
+PS + + T S + +ST + +L S ++ +P S + + S + SD +
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPS-STSVEVSISSSSLSSSDPL-- 170
Query: 396 SSSCFPAKINRC*SGGIPSLS*ILAFTFSMVSDASTSNVMVLPVSVFTKICIP 554
+SS F + ++ S PS+S + TFS + STS+ + SV + P
Sbjct: 171 TSSTF-SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSP 222
Score = 26.6 bits (56), Expect = 4.1
Identities = 33/137 (24%), Positives = 58/137 (42%)
Frame = +3
Query: 99 PRSLKTKCKVDSFWML*SDSVRPSSSCLPAKINRC*SGGIPSLS*ILAFTFSMVSDASTS 278
P S + + S + SD P +S + ++ S PS+S + TFS + STS
Sbjct: 150 PSSTSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTS 206
Query: 279 NVMVLPVSVLTKICMPPRSLKTKCRVDSFWML*SDSVRPSSSCFPAKINRC*SGGIPSLS 458
+ + SV++ P S + S S SSS + ++ S S S
Sbjct: 207 SSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS 266
Query: 459 *ILAFTFSMVSDASTSN 509
+ + S++S +S+S+
Sbjct: 267 ---SSSSSIISSSSSSS 280
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 676 PLYPESWLSHSQWVSR 723
PL PE WL ++ W+S+
Sbjct: 303 PLIPELWLQYTAWLSK 318
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = -1
Query: 793 WWHAXSLGKXLXG*NXHXXXVESIXTPIENVKAKIQDKEGXPPDQQRLXFAGKQLEDGRT 614
W H L + ++ + + E ++Q++ P+Q R+ + GKQ D +
Sbjct: 224 WAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQ--DPKK 281
Query: 613 LSDYNIQK 590
D +QK
Sbjct: 282 HLDAEVQK 289
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 160 YGHLQAVCPQRSIAADPEEFPLCPESWLSHFRWCQMLQLP 279
Y L +C + + P E+W + + W +MLQ P
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWTNLYYWREMLQRP 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,594
Number of Sequences: 5004
Number of extensions: 66427
Number of successful extensions: 219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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