Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d16
         (802 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d...    30   3.2  
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA...    30   3.2  
AY118519-1|AAM49888.1|  104|Drosophila melanogaster LD16736p pro...    30   4.2  

>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic discs
            protein protein.
          Length = 2895

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 739  GKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGK 569
            G   CC  C  +  +G  CK+  K    T    C E  KC   +   L   F+L  K
Sbjct: 1236 GSLCCCTECARVCHKGHDCKL--KRTAPTAYCDCWEKCKCKALIAGNLTKRFALLCK 1290


>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
            protein.
          Length = 2885

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 739  GKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGK 569
            G   CC  C  +  +G  CK+  K    T    C E  KC   +   L   F+L  K
Sbjct: 1243 GSLCCCTECARVCHKGHDCKL--KRTAPTAYCDCWEKCKCKALIAGNLTKRFALLCK 1297


>AY118519-1|AAM49888.1|  104|Drosophila melanogaster LD16736p
           protein.
          Length = 104

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 670 SNKSCKLHLHQVKLHKRDNKHTFQRVWRDAQCS*GKQV 783
           S KSC LH       K D+ HT    +R A C  G+QV
Sbjct: 19  SGKSCLLHHFIESKFKDDSSHTIGVEFRLADCERGRQV 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,893,800
Number of Sequences: 53049
Number of extensions: 616480
Number of successful extensions: 1451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)