Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d16
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 157 HNIVATNLKNNLLITNSW 210
           H+I+  + KN +L TN W
Sbjct: 40  HHIIDVDEKNQILTTNCW 57


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 576 QENISLQYFYHDL-FEI*FVYGIKLIIICTV 487
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 VK*HNIVATNLKNNLLITNSW 210
           +K   ++  NLKN ++ TN W
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLW 80


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 VK*HNIVATNLKNNLLITNSW 210
           +K   ++  NLKN ++ TN W
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLW 80


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 VK*HNIVATNLKNNLLITNSW 210
           +K   ++  NLKN ++ TN W
Sbjct: 56  LKLSQLIDVNLKNQIMTTNLW 76


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 163 IVATNLKNNLLITNSW--PNCNIFYIKFGECDF 255
           ++  NLKN ++ TN W     N + +K+   D+
Sbjct: 57  LIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDY 89


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 VK*HNIVATNLKNNLLITNSW 210
           +K   ++  NLKN ++ TN W
Sbjct: 65  LKLSQLIEMNLKNQVMTTNVW 85


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 163 IVATNLKNNLLITNSW 210
           I+  + KN LLITN W
Sbjct: 60  IIDVDEKNQLLITNLW 75


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 691 HLHQVKLHKRDNKHTFQRVWRDAQ 762
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 772 PKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAV 641
           P N    A  A KCA       L  E A C+   K +  +P  V
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLV 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,669
Number of Sequences: 438
Number of extensions: 5054
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)