Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d15
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    38   0.001
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    38   0.001
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.51 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    28   1.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    28   1.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   3.6  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    26   4.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   6.2  
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    25   8.2  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   8.2  

>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 289 STNKGHQMLQKMGWSAG-GLGASGQGIAEPI 200
           +  KG Q+L+ MGWS G GLG+  QG+ +P+
Sbjct: 145 NNGKGKQLLEMMGWSRGKGLGSENQGMVDPV 175


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/32 (53%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = -2

Query: 292 DSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 200
           ++T  G +ML+KMG+  G GLGA+ +GIAEP+
Sbjct: 114 NTTGFGAKMLEKMGYKQGQGLGANAEGIAEPV 145


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 531 SHDHVHSHLKENTICGKEREKVQEKDED 448
           SHDH HSH K +    +E+EK ++KD +
Sbjct: 721 SHDHGHSHSKSH---DREKEKEKKKDRE 745


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 295 IDSTNKGHQMLQKMGWSAG-GLG 230
           I   N G ++L+K+GW AG GLG
Sbjct: 650 ISKENPGRRLLEKLGWYAGKGLG 672


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 280 KGHQMLQKMGWSAGGLGASGQGIAEPIS 197
           KG++++  MGW A GL A    I   IS
Sbjct: 94  KGYKVIHPMGWDAFGLPAENAAIENGIS 121


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 175 QDQYKGVGVSLNDPYENFRKNKGAAFISRMKERALERSS*FPQAKTL 35
           ++ Y+ +  +LND ++   + K A F+S  K  A   S   P   +L
Sbjct: 462 ENTYRSIKQALNDSFDGNEEKKNAFFLSSYKSFASNESCNSPAIHSL 508


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 634 KSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 545
           K P P+P     +PT  G RY  R K P P
Sbjct: 148 KEPFPVPCT---EPTTSGDRYTVRMKAPTP 174


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 LSLTKPPLIGSAIPWPEAPRPPALQPI 257
           ++ T  P I  A P P +P+P A++P+
Sbjct: 580 ITTTTTPSITPADPVPTSPKPLAIEPV 606


>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 675 ERRRL*RKVIDKNRNHPVQFLRIYRNNLLHQEEDTDH 565
           E  R+ +KVI++NR       RI  + +L QE    H
Sbjct: 58  ENARMRKKVIEENRKKEEIEERILTDRILQQERKKSH 94


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 CTFVFSEVFIGIIQTDANTFILVLSIS 184
           CT+  S +F+GI+Q +   F++   I+
Sbjct: 187 CTYAASAMFVGILQVNNMRFLVAYPIA 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,798
Number of Sequences: 5004
Number of extensions: 59524
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)