Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d15
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 48 1e-05
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 43 3e-04
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 42 5e-04
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 34 0.13
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 33 0.30
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 32 0.40
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 31 0.92
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 31 1.2
07_03_1107 - 24024387-24024497,24025799-24026410 31 1.2
04_01_0206 + 2507827-2508705,2508844-2509902 31 1.2
04_04_0978 - 29856872-29858023 30 1.6
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 29 2.8
11_06_0289 - 21969248-21973516 29 2.8
11_06_0185 + 21018045-21022307 29 2.8
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919... 29 3.7
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 29 4.9
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 28 6.5
03_05_1167 + 30886130-30886351 28 6.5
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 28 6.5
01_02_0045 - 10576475-10577198,10578347-10578504 28 6.5
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 28 6.5
09_02_0082 - 4060018-4061604 28 8.6
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713... 28 8.6
07_03_0156 - 14524757-14526403 28 8.6
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 28 8.6
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 8.6
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = -2
Query: 295 IDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPY 131
+ S+N G ++LQKMGW GLG + QGI EPI G +RD + GVG D +
Sbjct: 59 LTSSNVGFRLLQKMGWKGKGLGKNEQGITEPIKAG-IRDAK---LGVGKQEQDDF 109
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Frame = -2
Query: 295 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVG-------VSLN 140
I + N GH++L KMGW G GLG+ G A+PI G D + + GVG S +
Sbjct: 408 IQADNIGHKLLSKMGWREGEGLGSERSGRADPIMAG---DVKKDHLGVGAVQPGEVTSED 464
Query: 139 DPYENFRK 116
D YE ++K
Sbjct: 465 DIYEQYKK 472
>02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 310 TTSGGIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 200
T ID +N G+++L+ MGW G GLG +G GI EP+
Sbjct: 954 TADRAIDESNVGNRILRNMGWQEGLGLGKTGSGIKEPV 991
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 673 KKTLIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 545
+K L RQ+ +PSP P+D + P R+ R R TP P
Sbjct: 143 RKDLSPPRRRQRQDTPSPDPRDAAGKDLSPPRQRRRRQDTPSP 185
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 328 LGGAYPTTSGGIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 200
+GGA + N +M++ MGW G LG S +G+ EPI
Sbjct: 402 MGGASVDMNFRSSGLNSAKKMMENMGWKEGEALGKSTKGMVEPI 445
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 271 QMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVGVS-LND 137
+M+ KMG+ G GLG SGQG+ +PI + +Q V S +ND
Sbjct: 310 KMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVND 356
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 31.1 bits (67), Expect = 0.92
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = -3
Query: 657 RKVIDKNRNHPVQFLRIYRNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKE 478
RK I++ R + R ++ EE+ + P D + + + IC +
Sbjct: 426 RKRIEEQRRREAERRRQLEKDMRRWEEEEEEEEAWP--WEDDDDDFLRMSQQLSVICSES 483
Query: 477 REKVQE-KDEDVPGRGQDQNHVVIPANEKDTE--THQDRAVWNALDRQHHLVFLVEHIPR 307
R K + + RG+ + H + P NE++ E + + AV N R HH HIPR
Sbjct: 484 RGKRGDWPNMKATRRGRRRTHALTPDNEEEEENLSELELAVENTRRRIHHC--NCNHIPR 541
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 277 GHQMLQKMGWSAG-GLGASGQGIAEPI 200
G +M+ KMG+ G GLG GQG+ +PI
Sbjct: 614 GSKMMAKMGFIEGTGLGKDGQGMMQPI 640
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 277 GHQMLQKMGWSAG-GLGASGQGIAEPIS 197
G +M+ +MG+ G GLG GQGI P++
Sbjct: 699 GSKMMARMGFVEGSGLGKDGQGIVNPLT 726
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 640 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 545
K +P+P P +K+P+PP ++ + SK P P
Sbjct: 135 KPDAPAPAPAK-KKKPSPPSKKKKKSSKAPAP 165
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = -3
Query: 609 IYRNN-LLHQEEDTDHGVK-HPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGR 436
+YRNN LLH +D DH ++ L Q +H +H K + V E+ DV
Sbjct: 181 VYRNNQLLHYLQDRDHRIREEEELSLQYAHS-LHHICKRGIV-----NFVIEEPLDVEKS 234
Query: 435 GQDQNHVVIP--ANEKDTETHQDRAVWNALDRQHHLVF 328
+ ++I NEKD +TH +W ++ + L++
Sbjct: 235 EGSRTKILIKKMLNEKDRKTH--IKMWKVIEMELSLMY 270
>04_04_0978 - 29856872-29858023
Length = 383
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 89 SADERCTFVFSEVFIGIIQTDANTFILVLSISYETATDRFCNTLA 223
SAD+ VFS + I II A+ F+LV SY T ++C T++
Sbjct: 46 SADDSSGPVFSPLVIAIIGVLASAFLLV---SYYTFISKYCGTVS 87
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 646 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 551
+++ P P + +QP PP +R +SR+K P
Sbjct: 91 QEQPSPPPPASSNTTQQPPPPQQRQQSRAKKP 122
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -3
Query: 486 GKEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRAVWNALDRQHH 337
G+ER++ Q+++++ GR ++QN V K+TE +++ +++ H
Sbjct: 470 GEERKEQQQEEQEKEGRKEEQNEV-----RKETEGRKEQVAGEEEEKEDH 514
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -3
Query: 486 GKEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRAVWNALDRQHH 337
G+ER++ Q+++++ GR ++QN V K+TE +++ +++ H
Sbjct: 469 GEERKEQQQEEQEKEGRKEEQNEV-----RKETEGRKEQVAGEEEEKEDH 513
>08_02_0671 -
19890187-19890295,19891186-19891320,19891551-19891917,
19892909-19893044,19894924-19894974,19895053-19895134,
19895801-19895853,19895989-19896065,19896234-19896273,
19897666-19897767,19897989-19898031,19898127-19899288,
19899902-19900271
Length = 908
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = -3
Query: 597 NLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDED-----VPGRG 433
NL+HQ+ + DH K L+ +++ S+ + +CG +R+ +DE+ VP
Sbjct: 546 NLVHQKNNVDHEPKE-ELV-----ENI-SNWERKDVCGNKRKLQSFRDEEYYISSVPQNQ 598
Query: 432 QDQNHVVIPANEKDTETHQDRAVWNALD 349
+ + + ANE E D AV + +D
Sbjct: 599 HLEAGLSVRANEGFVENRLDAAVLDLVD 626
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 643 QKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 551
++S S SP PK + PP RR SRS P
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTSRSPRP 63
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 664 LIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRS 566
++A+G++ SP Q+ P PP RR+RS
Sbjct: 55 VLARGFQADGGEVSPANPPWQRCPPPPRRRFRS 87
>03_05_1167 + 30886130-30886351
Length = 73
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 253 GWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLN 140
GW G GA G+ E SGG RD + G+ L+
Sbjct: 13 GWLGDGDGAVDAGMRERWSGGCGRDEARSWVGISAPLD 50
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 483 KEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRAVWNALDRQHH 337
+ER++ + +D D GR D++ + D E +DR R+HH
Sbjct: 287 RERDRSRGRDRDSRGRDSDRDS---KGRDSDRERERDREADRDRQRRHH 332
>01_02_0045 - 10576475-10577198,10578347-10578504
Length = 293
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -2
Query: 325 GGAYPTTSGGIDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVS 146
GGA T G +N G + + A G G+ QG A+P+SG ++ G
Sbjct: 80 GGAGSPTLGARRGSNSGARAGEGAALGASGAGSGRQG-ADPVSGSSAGEQDLGSSGSAAG 138
Query: 145 LNDPYENFRKNKG 107
P R+ G
Sbjct: 139 RPHPSMGERRGGG 151
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -3
Query: 600 NNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRG 433
NN L Q+ + H LI D+V L+ KE EK+ K + V GRG
Sbjct: 560 NNSLEQQNEMSTSTSHV-LINSGYGDNVSLRLENRRFTYKELEKITNKFKRVLGRG 614
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 192 PPLIGSAIPWPEAPRPPALQPI 257
PP++ + +P P AP PP P+
Sbjct: 177 PPVLATHVPTPPAPAPPVPTPL 198
>08_02_0660 -
19768165-19769394,19770500-19770752,19771307-19771372,
19771524-19771588,19773265-19773343,19773920-19774293
Length = 688
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 27 HIYKVLACGNHEERSRALSFILLMNAAP 110
H KVLAC E+++R L F + +A P
Sbjct: 383 HAGKVLACSREEDKTRILFFSFVDDAPP 410
>07_03_0156 - 14524757-14526403
Length = 548
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 495 TICGKEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRAVWNALD 349
T+ G + K+Q D+ + G+ + +P H+D+ V NAL+
Sbjct: 190 TLAGFDGFKIQRSDQTILFLGEGSDDGKVPPGSLCMINHKDKEVMNALE 238
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 643 QKSKSPSPI--PKDLQKQPTPPGRRYRSRSKTPEPN 542
Q+ + PSP P ++ TPP RR S + P+P+
Sbjct: 1006 QQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPS 1041
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 634 KSPSPIPKDLQKQPTPPGRRYRSRSKTPE 548
+SPSP P PT P RR +++ P+
Sbjct: 59 RSPSPSPSPPPPPPTKPSRRTLGKARAPK 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,943,083
Number of Sequences: 37544
Number of extensions: 446154
Number of successful extensions: 1984
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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