Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d15
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 77 1e-14
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 77 1e-14
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 41 0.001
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 41 0.001
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 38 0.005
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 38 0.005
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical pr... 32 0.47
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 32 0.47
Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 31 0.83
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.83
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.4
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.9
L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.9
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 29 2.5
AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical ... 29 3.3
Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical pr... 29 4.4
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical... 29 4.4
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 28 5.8
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/65 (52%), Positives = 45/65 (69%)
Frame = -2
Query: 283 NKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPYENFRKNKGA 104
NKG Q++ KMGW GLGA+ GI +P+SGG VR+R +Q+ G+G SL DPYE FRK +
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESGIVDPVSGGEVRNRNEQFMGLGRSL-DPYEQFRKQRSG 664
Query: 103 AFISR 89
+ R
Sbjct: 665 TYHDR 669
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/65 (52%), Positives = 45/65 (69%)
Frame = -2
Query: 283 NKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPYENFRKNKGA 104
NKG Q++ KMGW GLGA+ GI +P+SGG VR+R +Q+ G+G SL DPYE FRK +
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESGIVDPVSGGEVRNRNEQFMGLGRSL-DPYEQFRKQRSG 664
Query: 103 AFISR 89
+ R
Sbjct: 665 TYHDR 669
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 295 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDP 134
+DS N G ++L+ MGWS G GLG QG EP++ +R KG+G + +P
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVATEVKNNR----KGLGANEKEP 481
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 295 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDP 134
+DS N G ++L+ MGWS G GLG QG EP++ +R KG+G + +P
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVATEVKNNR----KGLGANEKEP 481
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 298 GIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDR 176
G ++NK +M+Q MG+ G GLGA GQGI EP+ + R
Sbjct: 136 GDGNSNKIMKMMQAMGYKPGEGLGAQGQGIVEPVQAQLRKGR 177
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 298 GIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDR 176
G ++NK +M+Q MG+ G GLGA GQGI EP+ + R
Sbjct: 150 GDGNSNKIMKMMQAMGYKPGEGLGAQGQGIVEPVQAQLRKGR 191
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 637 SKSPSPIPKDLQ-KQPTPPGRRYRSRSKTPEPNIP 536
SKSP P PK + + +PP RR RS S + P P
Sbjct: 354 SKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAP 388
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -2
Query: 646 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 536
R SKS SP PK + PP RR RS S + P P
Sbjct: 392 RSPSKSRSPAPK----REIPPARRRRSPSASKSPPAP 424
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 658 AQGYRQKSKSPSPIPKDLQ---KQPTPPGRRYR--SRSKTPEP 545
A+ R S+S SP PK + K P P RR R S SK+P P
Sbjct: 317 ARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP 359
>Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical
protein F11C1.4 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = -3
Query: 423 NHVVIPANEKDTETHQDRAVWNALDR-QHHLVFLVEHIPR 307
NHV++P + + +E+H+ ++ D+ QH L F+ E++PR
Sbjct: 68 NHVLLPTSLRCSESHKVNERFSLADQVQHKLDFVKEYLPR 107
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 271 QMLQKMGWSAG-GLGASGQGIAEPISGGFVRDR 176
+++ MG AG GLG GQGI+EPI+ R R
Sbjct: 92 RLMAAMGHKAGEGLGKHGQGISEPIASSTQRGR 124
>Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical
protein T23G7.3 protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.83
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = -2
Query: 292 DSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI------SG-GFVRDRQDQYKGVGVSLND 137
D ++++KMGWS G GLG + QG A+ + SG G D+ Y +S +D
Sbjct: 25 DDQKLSKKLMEKMGWSEGDGLGRNRQGNADSVKLKANTSGRGLGADKMADYDSTWISHHD 84
Query: 136 PY 131
+
Sbjct: 85 DF 86
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 277 GHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQ 173
G ML+KMGW G GLG G EP+ DR+
Sbjct: 641 GRLMLEKMGWRPGEGLGKDATGNLEPLMLDVKSDRK 676
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 646 RQKSKSPSPIPK--DLQKQPTPPGRRYRSRSKTPEPNI 539
+Q+S+SP P + D + +PP R YR R ++ P +
Sbjct: 150 QQRSRSPPPAKRRRDQSRSKSPPRRNYRQRQRSGSPPV 187
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 643 QKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 545
+KS+SPS PK + + P+PP R RS S+ P
Sbjct: 265 RKSRSPSRSPKKVDRSPSPP-RGSRSPSEKGSP 296
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 700 KQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 536
K+K KKT G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1829 KEKSPSSPTKKT----GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical
protein F09G8.8 protein.
Length = 639
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 68 FKGSFLHSADERCTFVFSEVFIGIIQTDANTFILVLSISYETATDRFCNTLA*STKAPCT 247
+KG+F H F V II T I L + T C T +T+AP T
Sbjct: 184 YKGTFYHKFVSVQWFELGVVAQSIIDTITEDGICFLDQGWTTPKQEICTTSTTTTRAPTT 243
Query: 248 PT 253
T
Sbjct: 244 TT 245
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 700 KQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 536
K+K KKT G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1829 KEKSPSSPTKKT----GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 700 KQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 536
K+K KKT G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1829 KEKSPSSPTKKT----GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2
Query: 700 KQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 536
K+K KKT G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1829 KEKSPSSPTKKT----GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = -2
Query: 247 SAGGLGASGQGIAEPISGGFV----RDRQDQYKGVGVSLNDPYENFRKNKGAAFISRMKE 80
S+GG G G GI GG DR Q G LN P R + +S K
Sbjct: 1373 SSGGAGGGGSGIGGSTGGGITDNDDDDRFSQISGTSSFLNGPPGAIRGGNRNSSVSGSKR 1432
Query: 79 RA 74
R+
Sbjct: 1433 RS 1434
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = -2
Query: 247 SAGGLGASGQGIAEPISGGFV----RDRQDQYKGVGVSLNDPYENFRKNKGAAFISRMKE 80
S+GG G G GI GG DR Q G LN P R + +S K
Sbjct: 1373 SSGGAGGGGSGIGGSTGGGITDNDDDDRFSQISGTSSFLNGPPGAIRGGNRNSSVSGSKR 1432
Query: 79 RA 74
R+
Sbjct: 1433 RS 1434
>AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical
protein T22H9.3 protein.
Length = 990
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 498 NTICGKEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRA 367
N +CGK EK D GRG D N D HQD A
Sbjct: 296 NFVCGKYLEKRGSSRNDYRGRG-DYNRKKTGGGSTDAPDHQDVA 338
>Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 706 ITKQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 536
+TKQ+I++E + I + +K ++P PK Q P R +S P P P
Sbjct: 203 VTKQEIEEEEPDEPTIYEDVSRKEEAPKKEPKQ-QDHVVPEPPREKSVPPPPPPPPP 258
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
C27F2.8 protein.
Length = 1715
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 640 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 551
+ K P+ IP + KQPTP + R+ SKTP
Sbjct: 1348 EQKKPNAIPVERPKQPTP--SKARTPSKTP 1375
>AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 706 ITKQKIQQER*KKTLIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 536
+TKQ+I++E + I + +K ++P PK Q P R +S P P P
Sbjct: 203 VTKQEIEEEEPDEPTIYEDVSRKEEAPKKEPKQ-QDHVVPEPPREKSVPPPPPPPPP 258
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 531 SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQNHVVIPANEKDTETHQDRA 367
SH H H H K + ++ E+ E+ E +++ PA K+ E Q +A
Sbjct: 103 SHGHGHGHAKHSKKHEEKHEQKHEEKEHAEPEKKEEAKPEKPAEPKEPEPAQKQA 157
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 619 LDWVISIFVYNLAL*AS 669
+DW I+IF YNLA+ AS
Sbjct: 1 MDWKITIFTYNLAMKAS 17
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,483
Number of Sequences: 27780
Number of extensions: 354626
Number of successful extensions: 1391
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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