Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d15
(719 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 30 0.025
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 27 0.18
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 25 0.54
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 25 0.54
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 25 0.54
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 25 0.54
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 25 0.54
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 25 0.54
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 25 0.54
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 25 0.54
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 25 0.54
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.9
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 22 6.7
AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding prote... 22 6.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.9
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 29.9 bits (64), Expect = 0.025
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = -3
Query: 639 NRNHPVQFLRIYRNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQE 460
+R+ ++ + R + LH E+ + Y S + K + RE +E
Sbjct: 254 SRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRE 313
Query: 459 KDEDVPGRGQDQNHVVIPAN 400
+ D GRG+ + H +IP++
Sbjct: 314 RSRDRRGRGRSREHRIIPSH 333
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 27.1 bits (57), Expect = 0.18
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = -3
Query: 645 DKNRNHPVQFLRIYRNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKV 466
D+NR + + R + LH E+ + Y S + K K RE
Sbjct: 240 DRNREYKKKDRRYEK---LHNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETS 296
Query: 465 QEKDEDVPGRGQDQNHVVIPAN 400
+E+ D RG+ + H +IP++
Sbjct: 297 KERSRDRRERGRSREHRIIPSH 318
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 18 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 77
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 78 EHRIIPSH 85
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.54
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = -3
Query: 603 RNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENTICGKEREKVQEKDEDVPGRGQDQ 424
R + LH E+ + Y S + K + RE +E+ D RG+ +
Sbjct: 267 RYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRERGRSR 326
Query: 423 NHVVIPAN 400
H +IP++
Sbjct: 327 EHRIIPSH 334
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 238 GLGASGQGIAEPISGG 191
G GASG G AE +S G
Sbjct: 597 GSGASGSGSAENLSSG 612
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding protein
ASP6 protein.
Length = 146
Score = 21.8 bits (44), Expect = 6.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 375 DRAVWNALDRQHHLVFLVEHIPRLPEV 295
D +W+ + ++ L E+IPR+ V
Sbjct: 85 DVILWDFFVKNARMILLEEYIPRVESV 111
>AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding protein
protein.
Length = 120
Score = 21.8 bits (44), Expect = 6.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 375 DRAVWNALDRQHHLVFLVEHIPRLPEV 295
D +W+ + ++ L E+IPR+ V
Sbjct: 59 DVILWDFFVKNARMILLEEYIPRVESV 85
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 456 DEDVPGRGQDQNHVVIPANE 397
+E VPG D ++V+P+ E
Sbjct: 145 EEFVPGDDYDGKYLVLPSGE 164
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,321
Number of Sequences: 438
Number of extensions: 4821
Number of successful extensions: 26
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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