Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d10
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    33   0.033
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    28   1.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    26   5.0  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.7  

>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 677 VQVEDIIFLVRKDARKYARVKDLLTMNEELKKARK 573
           + VED+ FL+R D  K  R+K  L+  E  KKA++
Sbjct: 62  ITVEDLFFLIRHDRAKVNRLKTYLSWKEVRKKAKE 96


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 231 IYIQDLIK-FTTIHDISVVVNVQTQKQCYN*IYVTCINQSRSMASVV 368
           + ++DL + FT +  I   VN +  K   N I +TC+N SRS  S+V
Sbjct: 8   VNLRDLARIFTNLSRIDDAVNWEINK---NQIEITCLNSSRSGFSMV 51


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 333 CINQSRSMASVVWPQYGYCWSSIISKHFNTNINNHTLDETSQTET 467
           C NQS +   +     GY W S+  K +N+ I   T+ + SQT T
Sbjct: 420 CNNQSFNSCQLQKITRGY-WISLQQKEYNSRIYVDTVADQSQTYT 463


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 405 SKHFNTNINNHTLDETSQTET 467
           S HF+ N  +  +DET  TET
Sbjct: 199 SSHFSQNFEDSIMDETEATET 219


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 249 IKFTTIHDISVVVNVQTQKQCYN*IYVTCINQSRSMASVVWPQYGYCWSSIISKHFNTNI 428
           + +T +HD   +   Q Q  CYN  YV    ++ S  S+V P Y     S ++++ +   
Sbjct: 744 VHYTVLHDEIQMPPDQFQTLCYNLCYVYA--RATSAVSLVPPVYYAHLVSNLARYQDVTA 801

Query: 429 NNHTLDETSQ 458
           ++ T  ETS+
Sbjct: 802 DD-TFVETSE 810


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 192 YHTFKVIKTNYRYIYIQDLIKFT 260
           ++ FKVI T Y ++Y+++ +  T
Sbjct: 59  FNLFKVINTTYTFLYLRNSLTIT 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,955
Number of Sequences: 5004
Number of extensions: 48560
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)