Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d10
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749...    58   7e-09
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           31   0.97 

>01_03_0155 +
           13274537-13274741,13274827-13274864,13274909-13274968,
           13275117-13275176,13277072-13277146,13277233-13277346
          Length = 183

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = -2

Query: 731 YNTKNIYNRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFD 564
           Y T  ++       + G++  ED ++L+RKD RK  R  +LL+MNEELK+ARKAFD
Sbjct: 117 YVTDLVHKAQNVASKRGKLLTEDFLYLIRKDVRKLHRATELLSMNEELKQARKAFD 172


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 517 VNLFPLKNPILYYYHCXXXXXXXXXXX*LLMFVLKCFEIIEDQQ*PYCGHTTDAMLLD 344
           V+LFP +NPI++ Y               L+  +  F ++  Q+ P     TD++++D
Sbjct: 109 VSLFPSRNPIVFRYRMGKKLRKIVEKIKELVSEMNSFGLVHQQETPKQWRKTDSIMVD 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,771
Number of Sequences: 37544
Number of extensions: 241636
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)