Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d10
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription facto... 92 2e-18
BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II... 92 2e-18
BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II... 92 2e-18
BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II... 91 5e-18
BC050384-1|AAH50384.1| 328|Homo sapiens suppressor of Ty 3 homo... 32 1.9
BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein. 32 1.9
AL499610-1|CAH73344.1| 328|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL360272-2|CAH70846.1| 328|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL161905-2|CAI15664.1| 328|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL138880-2|CAI14625.1| 328|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homo... 32 1.9
AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase compl... 32 1.9
AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein. 32 1.9
AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor SU... 32 1.9
>X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription factor
TFIID protein.
Length = 124
Score = 92.3 bits (219), Expect = 2e-18
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = -2
Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 552
++AM +GR GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein5 (PGRM) (PGM5) protein.
Length = 124
Score = 92.3 bits (219), Expect = 2e-18
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = -2
Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 552
++AM +GR GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 92.3 bits (219), Expect = 2e-18
Identities = 41/53 (77%), Positives = 48/53 (90%)
Frame = -2
Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 552
++AM +GR GRVQVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 70 HKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 90.6 bits (215), Expect = 5e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = -2
Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKY 552
++AM +GR GR QVEDI+FL+RKD RK+ARVKDLLTMNEELK+ARKAFDE Y
Sbjct: 70 HKAMSIGRQGRAQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANY 122
>BC050384-1|AAH50384.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 72 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 127
>BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein.
Length = 370
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 114 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 169
>AL499610-1|CAH73344.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 72 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 127
>AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AL360272-2|CAH70846.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 72 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 127
>AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AL161905-2|CAI15664.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 72 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 127
>AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AL138880-2|CAI14625.1| 328|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 328
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 72 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 127
>AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase complex
subunit protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein.
Length = 317
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 61 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 116
>AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor
SUPT3H protein.
Length = 399
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 719 NIYNRAMEVGRTGRVQV---EDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDE 561
N+ +A EV + +V ED++FL+RKD +K R+ + + + K K DE
Sbjct: 143 NLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDE 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,863,401
Number of Sequences: 237096
Number of extensions: 1585360
Number of successful extensions: 2227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2227
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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