Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d10
         (747 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071439-1|AAL49061.1|  136|Drosophila melanogaster RE52427p pro...   108   7e-24
AE014134-3203|AAF53875.1|  136|Drosophila melanogaster CG10756-P...   108   7e-24

>AY071439-1|AAL49061.1|  136|Drosophila melanogaster RE52427p
           protein.
          Length = 136

 Score =  108 bits (260), Expect = 7e-24
 Identities = 51/55 (92%), Positives = 54/55 (98%)
 Frame = -2

Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVG 546
           +RAME+GRTGRVQVEDIIFLVRKD RKYARVKDLLTMNEELKKARKAFDE+KYVG
Sbjct: 76  HRAMEIGRTGRVQVEDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYVG 130


>AE014134-3203|AAF53875.1|  136|Drosophila melanogaster CG10756-PA
           protein.
          Length = 136

 Score =  108 bits (260), Expect = 7e-24
 Identities = 51/55 (92%), Positives = 54/55 (98%)
 Frame = -2

Query: 710 NRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYVG 546
           +RAME+GRTGRVQVEDIIFLVRKD RKYARVKDLLTMNEELKKARKAFDE+KYVG
Sbjct: 76  HRAMEIGRTGRVQVEDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYVG 130


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,048,808
Number of Sequences: 53049
Number of extensions: 474610
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)