Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d10
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical p...    68   6e-12
AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine re...    28   8.1  
AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical
           protein C14A4.10 protein.
          Length = 121

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 29/56 (51%), Positives = 46/56 (82%)
 Frame = -2

Query: 722 KNIYNRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVK 555
           K +   AM+VG+  ++ +EDI +L+R+D +K++RVKDLL+M+EELKKARK F+++K
Sbjct: 63  KELCQLAMKVGKPDKMALEDIHYLIRRDPKKFSRVKDLLSMSEELKKARKQFEDMK 118


>AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 60 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 321 IYVTCINQSRSMASVVWPQYGYCWSSIISKHFNTNINNHTLDETSQTETL 470
           I++T +  +  + ++V P  GY W     K  + NIN+ +    +Q   L
Sbjct: 184 IFMTLVTFTLVLLTIVAPTLGYSWRRQTLKVLDRNINSLSAQSVTQFRAL 233


>AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical
           protein Y45G12C.7 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 321 IYVTCINQSRSMASVVWPQYGYCWSSIISKHFNTNINNHTLDETSQTETL 470
           I++T +  +  + ++V P  GY W     K  + NIN+ +    +Q   L
Sbjct: 184 IFMTLVTFTLVLLTIVAPTLGYSWRRQTLKVLDRNINSLSAQSVTQFRAL 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,551
Number of Sequences: 27780
Number of extensions: 267954
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)