Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d09
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    33   0.059
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   3.9  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    26   6.7  
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    25   8.9  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    25   8.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.9  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 642 APTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGN 475
           +PT+ R N  ++++ YP  K +  E++    F  +   E+   NK    +I+V+ N
Sbjct: 371 SPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN 426


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 450  SCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAK 340
            S ++ L +KN     L  +    KFD +SSPIK C++
Sbjct: 1328 SHLLKLLEKNKWIFTLNENDIATKFDENSSPIKDCSQ 1364


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 522 CYGNKLHACAIDVIGNITIAVMYN--SCMMDLNQKNHGSDDLAADACGNKFDIDSSPI 355
           C    LH        ++  A M N  S   D N +   ++++   AC N+FD   SP+
Sbjct: 153 CTCQSLHPDTFSSDNDVENASMGNPMSLFFDPNHQWVTAENVDTSACDNRFDSPESPV 210


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 342 KGDRGDELLKKYGDESKKANYLFVPYI-LVNGKESSIYAFILDVCNAFI 199
           +G  GDEL++K+G   K+     +      N  +     FI   CN  I
Sbjct: 96  RGGVGDELIRKFGRLEKETELELMDIAKTANSLQPGWNQFIFQTCNEII 144


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 363 SPIKRCAK--GDRGDEL-LKKYGDESKKANYLFVPYILVNGKES 241
           +P+K C    G   D L L +YG     ANYLF+   +  GK+S
Sbjct: 53  APLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQS 96


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
 Frame = +3

Query: 618  DSIFQLLVLISRSRTLYSQD---------TRIRNRPLHLLF 713
            DSI ++   ISRS ++ + D          RIRNRP+H+L+
Sbjct: 2816 DSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILY 2856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,794
Number of Sequences: 5004
Number of extensions: 57590
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)