Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d09
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 87 1e-17
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 55 5e-08
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517... 32 0.43
03_06_0692 + 35585445-35586008,35586222-35586560 31 1.3
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 30 1.7
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 30 1.7
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 1.7
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 29 3.1
02_04_0468 - 23172561-23174201 29 4.0
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 28 9.3
01_01_0433 + 3282195-3285185 28 9.3
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 87.4 bits (207), Expect = 1e-17
Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTI-ERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNK 508
SLCP +F LA + L +++++ PYG A+ K+GK +HG EEC+ N
Sbjct: 40 SLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNARV--KDGKISCQVEHGSEECFLNT 97
Query: 507 LHACAIDVIGNITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRG 328
+ ACAID ++ + + C+ DL NH + ++C K ++D P+ C KG+RG
Sbjct: 98 VEACAIDAWPDLRVHFRFIYCVEDL-VVNHKQREW--ESCFGKLNLDPKPVTDCYKGERG 154
Query: 327 DELLKKYG--DESKKANYLFVPYILVNGKE--SSIYAFILDVCNAFINPPP 187
+L KYG ++ + + +VP+++V+G+ F +C A+ PP
Sbjct: 155 HQLSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAYKGHPP 205
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 55.2 bits (127), Expect = 5e-08
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTI-ERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNK 508
+LCP C F LA + L+ +++ + P+G + + +G CQHG EEC N
Sbjct: 7 TLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGR-VSPDGS--ITCQHGEEECQLNA 63
Query: 507 LHACAIDVIGNITIAVMYNSCM--MDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGD 334
+ AC I + + + +C+ + L QK + A +C + + S P+ C
Sbjct: 64 IEACVIRLWPDAEQHFPFINCIEHLALTQKWN-----AWQSCFQETGLASQPVMDCYNSG 118
Query: 333 RGDELLKKYGDESK--KANYLFVPYILVNGK 247
G +L +Y E+ + + FVP++ VNG+
Sbjct: 119 YGTQLQLQYAAETNALQPPHQFVPWVTVNGR 149
>07_01_0685 -
5177340-5177363,5177770-5177865,5177991-5178053,
5178138-5178232,5178941-5179028,5179372-5179444,
5179866-5179920,5180355-5180463
Length = 200
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 432 NQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDR-GDELLKKYGDESKKAN 283
N + H SD++ GNK D+D+ + A+G + DE K+ + S K N
Sbjct: 116 NIEQHASDNVNKILVGNKVDMDTKRVVSTAQGQKLADEYGMKFFETSAKTN 166
>03_06_0692 + 35585445-35586008,35586222-35586560
Length = 300
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 495 AIDVIGNITIAVMYNSCMMDLNQKN-HGSDDLAADACGNKFD 373
A+ V+G I ++Y LN +N +G DD+A D GN D
Sbjct: 72 AVCVVGVIVAYILYKKRTAALNNRNPNGGDDIADDFWGNWHD 113
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 432 NQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGDELLKKYG 304
N + H SD++ GNK D+D S KR +G L +YG
Sbjct: 90 NIEQHASDNVNKILVGNKADMDES--KRAVPTSKGQALADEYG 130
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 432 NQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGDELLKKYG 304
N + H SD++ GNK D+D S KR +G L +YG
Sbjct: 90 NIEQHASDNVNKILVGNKADMDES--KRAVPTSKGQALADEYG 130
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 291 FCSHRRIS*EVRHLCHLLRNVLLAMNQYR 377
FC + + E R LC ++RN L +N+YR
Sbjct: 185 FCKQYKRTTEFRRLCEIIRNHLANLNKYR 213
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 432 NQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGDELLKKYG 304
N + H SD++ GNK D+D S KR +G L +YG
Sbjct: 103 NIEQHASDNVNKILVGNKADMDES--KRAVPTAKGQALADEYG 143
>02_04_0468 - 23172561-23174201
Length = 546
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 314 LRSSSPLSPFAQRFIGDESISNLLPHASAARSSEPWFFW 430
L SS+P + ++ F+ D IS +L + WFFW
Sbjct: 299 LMSSAPGADYSNEFLRDFCISFILAGRDTSSVGLAWFFW 337
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 127 DPLLRN*LYASNRIKSIDTMRWRINKRIANV*DK 228
DPL+R L + + ++ + +WR+NKR+ ++ D+
Sbjct: 393 DPLVRQGLDRT-ALNTLGSTKWRVNKRVLSIVDR 425
>01_01_0433 + 3282195-3285185
Length = 996
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 296 LSSPYFLRSSSPLSPFAQRFIGDESISNLLPHASAARSSEPWFFWF 433
L + F+R++ P + ++S SN++PH S +S++ F F
Sbjct: 929 LPNSSFIRNAGLCGPPLSKECSNKSTSNVMPHLSEEKSADIILFLF 974
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,109
Number of Sequences: 37544
Number of extensions: 341932
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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