Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d09
         (762 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.1  
AY842257-1|AAW29520.1|   92|Anopheles gambiae glutathione peroxi...    24   5.9  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 477  NITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGDELLKKYGDE 298
            +I I ++  S M D+ Q+ + +D  +A    ++ +ID S ++   K     + +KK GD 
Sbjct: 947  SIEIPLLQGS-MDDIGQQEYAADGGSAYERESRIEIDYSKLEHHLKNLSDPDQIKKSGDS 1005

Query: 297  SKK 289
              K
Sbjct: 1006 LAK 1008


>AY842257-1|AAW29520.1|   92|Anopheles gambiae glutathione
           peroxidase protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 321 LLKKYGDESKK-ANYLFVPYILVNGKES 241
           LL+KY ++++K  N LF P      KES
Sbjct: 4   LLRKYHNDTRKDLNVLFFPCFQFGSKES 31


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,917
Number of Sequences: 2352
Number of extensions: 15044
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)