Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17d09
(762 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021136-1|AAH21136.1| 250|Homo sapiens interferon, gamma-induc... 87 5e-17
AF097362-1|AAF04618.1| 261|Homo sapiens gamma-interferon induci... 87 5e-17
AB049659-1|BAC98466.1| 250|Homo sapiens legumaturain protein. 87 6e-17
BC031020-1|AAH31020.1| 250|Homo sapiens interferon, gamma-induc... 86 1e-16
AK123477-1|BAC85622.1| 148|Homo sapiens protein ( Homo sapiens ... 70 1e-11
J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducibl... 62 2e-09
AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens ... 31 4.5
BC126358-1|AAI26359.1| 1059|Homo sapiens acyl-Coenzyme A dehydro... 30 7.8
AY323912-1|AAQ88260.1| 1059|Homo sapiens ACAD 10 protein. 30 7.8
AK097425-1|BAC05046.1| 492|Homo sapiens protein ( Homo sapiens ... 30 7.8
AK092356-1|BAC03869.1| 890|Homo sapiens protein ( Homo sapiens ... 30 7.8
>BC021136-1|AAH21136.1| 250|Homo sapiens interferon,
gamma-inducible protein 30 protein.
Length = 250
Score = 87.4 bits (207), Expect = 5e-17
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKL 505
+LC GCR F L PT + + LN+ + PYG A+ +G++EF CQHG EEC NK+
Sbjct: 70 ALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKV 129
Query: 504 HACAIDVIGNITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGD 325
AC +D + ++ +A + CM + S L D+ I CA GDRG
Sbjct: 130 EACVLDEL-DMELAFLTIVCMEEFEDMER-SLPLCLQLYAPGLSPDT--IMECAMGDRGM 185
Query: 324 ELLKKYGD--ESKKANYLFVPYILVNGKESSIYAFILD-VCNAFINPPPH-CVNAFYSVT 157
+L+ ++ + + +VP++ VNGK +L VC + P C ++ S+
Sbjct: 186 QLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSSTSSLR 245
Query: 156 SV 151
SV
Sbjct: 246 SV 247
>AF097362-1|AAF04618.1| 261|Homo sapiens gamma-interferon inducible
lysosomal thiol reductase protein.
Length = 261
Score = 87.4 bits (207), Expect = 5e-17
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKL 505
+LC GCR F L PT + + LN+ + PYG A+ +G++EF CQHG EEC NK+
Sbjct: 81 ALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKV 140
Query: 504 HACAIDVIGNITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGD 325
AC +D + ++ +A + CM + S L D+ I CA GDRG
Sbjct: 141 EACVLDEL-DMELAFLTIVCMEEFEDMER-SLPLCLQLYAPGLSPDT--IMECAMGDRGM 196
Query: 324 ELLKKYGD--ESKKANYLFVPYILVNGKESSIYAFILD-VCNAFINPPPH-CVNAFYSVT 157
+L+ ++ + + +VP++ VNGK +L VC + P C ++ S+
Sbjct: 197 QLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSSTSSLR 256
Query: 156 SV 151
SV
Sbjct: 257 SV 258
>AB049659-1|BAC98466.1| 250|Homo sapiens legumaturain protein.
Length = 250
Score = 87.0 bits (206), Expect = 6e-17
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKL 505
+LC GCR F L PT + + LN+ + PYG A+ +G++EF CQHG EEC NK+
Sbjct: 70 ALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKV 129
Query: 504 HACAIDVIGNITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGD 325
AC +D + ++ +A + CM + S L D+ I CA GDRG
Sbjct: 130 EACVLDEL-DMELAFLTIVCMEEFEDMER-SLPLCLQLYAPGLSPDT--IMECAMGDRGM 185
Query: 324 ELLKKYGD--ESKKANYLFVPYILVNGKESSIYAFILD-VCNAFINPPPH-CVNAFYSVT 157
+L+ ++ + + +VP++ VNGK +L VC + P C ++ S+
Sbjct: 186 QLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLALVCQLYQGKKPDVCPSSTSSLR 245
Query: 156 SV 151
SV
Sbjct: 246 SV 247
>BC031020-1|AAH31020.1| 250|Homo sapiens interferon,
gamma-inducible protein 30 protein.
Length = 250
Score = 85.8 bits (203), Expect = 1e-16
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKL 505
+LC GC+ F L PT + + LN+ + PYG A+ +G++EF CQHG EEC NK+
Sbjct: 70 ALCGGCQAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKV 129
Query: 504 HACAIDVIGNITIAVMYNSCMMDLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGD 325
AC +D + ++ +A + CM + S L D+ I CA GDRG
Sbjct: 130 EACVLDEL-DMELAFLTIVCMEEFEDMER-SLPLCLQLYAPGLSPDT--IMECAMGDRGM 185
Query: 324 ELLKKYGD--ESKKANYLFVPYILVNGKESSIYAFILD-VCNAFINPPPH-CVNAFYSVT 157
+L+ ++ + + +VP++ VNGK +L VC + P C ++ S+
Sbjct: 186 QLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSSTSSLR 245
Query: 156 SV 151
SV
Sbjct: 246 SV 247
>AK123477-1|BAC85622.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ41483 fis, clone BRTHA2002808, highly similar
to GAMMA-INTERFERON-INDUCIBLE PROTEIN IP-30 PRECURSOR.
).
Length = 148
Score = 69.7 bits (163), Expect = 1e-11
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Frame = -1
Query: 618 QYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGNITIAVMYNSCMM 439
+ LN+ + PYG A+ +G++EF CQHG EEC NK+ AC +D + ++ +A + CM
Sbjct: 2 EILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCME 60
Query: 438 DLNQKNHGSDDLAADACGNKFDIDSSPIKRCAKGDRGDELLKKYGD--ESKKANYLFVPY 265
+ S L D+ I CA GDRG +L+ ++ + + +VP+
Sbjct: 61 EFEDMER-SLPLCLQLYAPGLSPDT--IMECAMGDRGMQLMHANAQRTDALQPPHEYVPW 117
Query: 264 ILVNG 250
+ VNG
Sbjct: 118 VTVNG 122
>J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducible
protein precursor protein.
Length = 303
Score = 62.5 bits (145), Expect = 2e-09
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = -1
Query: 684 SLCPGCRVFDSAILAPTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKL 505
+LC GCR F L PT + + LN+ PYG A+ +G++EF CQ G EEC NK+
Sbjct: 81 ALCGGCRAFLIRELFPTWLLVMEILNVTSVPYGNAQEQNVSGRWEFKCQLGEEECKFNKV 140
Query: 504 HACAID 487
AC +D
Sbjct: 141 EACVLD 146
>AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens
cDNA FLJ16186 fis, clone BRTHA2007060, moderately
similar to EUKARYOTIC TRANSLATION INITIATION FACTOR 3
SUBUNIT 10. ).
Length = 957
Score = 31.1 bits (67), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 291 FCSHRRIS*EVRHLCHLLRNVLLAMNQYR 377
FC + + E+R LC ++RN L +N+YR
Sbjct: 185 FCKQYKRTTELRRLCEIIRNHLANLNKYR 213
>BC126358-1|AAI26359.1| 1059|Homo sapiens acyl-Coenzyme A
dehydrogenase family, member 10 protein.
Length = 1059
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 348 CAKGDRGD-ELLKKYGDESKKANYLFVPYILVNGKESSIYA 229
C+ D G+ ELL +YG E++KA +L +P L+ GK S +A
Sbjct: 756 CSAPDTGNMELLVRYGTEAQKARWL-IP--LLEGKARSCFA 793
>AY323912-1|AAQ88260.1| 1059|Homo sapiens ACAD 10 protein.
Length = 1059
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 348 CAKGDRGD-ELLKKYGDESKKANYLFVPYILVNGKESSIYA 229
C+ D G+ ELL +YG E++KA +L +P L+ GK S +A
Sbjct: 756 CSAPDTGNMELLVRYGTEAQKARWL-IP--LLEGKARSCFA 793
>AK097425-1|BAC05046.1| 492|Homo sapiens protein ( Homo sapiens
cDNA FLJ40106 fis, clone TESTI2006667, moderately
similar to Probable acyl-CoA dehydrogenase. ).
Length = 492
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 348 CAKGDRGD-ELLKKYGDESKKANYLFVPYILVNGKESSIYA 229
C+ D G+ ELL +YG E++KA +L +P L+ GK S +A
Sbjct: 358 CSAPDTGNMELLVRYGTEAQKARWL-IP--LLEGKARSCFA 395
>AK092356-1|BAC03869.1| 890|Homo sapiens protein ( Homo sapiens
cDNA FLJ35037 fis, clone OCBBF2016729, moderately
similar to Probable acyl-CoA dehydrogenase - Deinococcus
radiodurans. ).
Length = 890
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 348 CAKGDRGD-ELLKKYGDESKKANYLFVPYILVNGKESSIYA 229
C+ D G+ ELL +YG E++KA +L +P L+ GK S +A
Sbjct: 756 CSAPDTGNMELLVRYGTEAQKARWL-IP--LLEGKARSCFA 793
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,627,889
Number of Sequences: 237096
Number of extensions: 1921285
Number of successful extensions: 7344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7339
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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