Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d08
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    49   4e-06
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    32   0.37 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    32   0.37 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    32   0.37 
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = -2

Query: 737 LTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLV 558
           L L+GVF+YI+AV L  DL F+       +   VI+ +  Y   A  CWIAA LY +TL+
Sbjct: 27  LGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK--YNEKATQCWIAAGLYAVTLI 81

Query: 557 VSGHQFWLNNRSSVSM 510
                FW N  ++  +
Sbjct: 82  A---VFWQNKYNTAQI 94


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 737 LTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGYTLNAQNCWIAALLYL 570
           + ++G  +Y ++V L EDLP + K    S+  D      K Y  NA NCWIA  +Y+
Sbjct: 21  MAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCWIACGVYI 77


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 659 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 555
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 564 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 680
           C + +QCR P  LC QG +  F+ N +  DR R   L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,460
Number of Sequences: 27780
Number of extensions: 331168
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)