Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17d08
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.75 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   7.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   7.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   7.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   7.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.2  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 80  NTLNC*NKYKYYFHTYNTVHKKL 12
           N  N  N Y  Y + YNT +KKL
Sbjct: 90  NNYNYNNNYNNYNNNYNTNYKKL 112


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 229 ICWKKLDAKGRGSFIVADYG 288
           I W K D +GR   I  +YG
Sbjct: 46  IAWMKFDKEGRLRAINPEYG 65


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 144 FNLDDWNSNNKKYYMLFNFV 85
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 144 FNLDDWNSNNKKYYMLFNFV 85
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 144 FNLDDWNSNNKKYYMLFNFV 85
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 144 FNLDDWNSNNKKYYMLFNFV 85
           +N +++N+N KK Y   N++
Sbjct: 100 YNNNNYNNNCKKLYYNINYI 119


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 158 NELSTSI*MIGIVTIKNIICYLI 90
           NE+  SI   G + +K  +C++I
Sbjct: 209 NEIIRSIQGTGTIILKKTVCFVI 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,758
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)